| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,126,647 | +C | intergenic (‑101/+48) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,126,645 | 1 | . | C | 80.0% | 48.4 / 9.5 | 20 | intergenic (‑99/+50) | tdcG‑II/gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base . (4/0); new base C (5/11); total (9/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.60e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GGG‑T‑AAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGA > NC_002947/1126501‑1126774 | aGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGGGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GGG‑T‑AAA‑c < 3:134281/146‑1 (MQ=255) gggCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GGG‑T‑AAA‑cccgc < 8:68534/148‑4 (MQ=255) gccgatgccgatCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTAACCCGAATGGGGTGGTATAGCCCCCAAAGCATTCC‑CGGGG‑T‑AAC‑CCGcac > 7:76586/1‑146 (MQ=255) cgatCTTGAACCGGGCGAAGACGCTCAGTGACCTGGGCACCTCCTGCCCGGTTGTGGGGTGCAAATTGAGCCCTGTCGGCGGGGGTTTACCCGCGAATGGGGAGGTATAGCCACCATCGCATGCG‑C‑GGG‑T‑AAACCCGCTCCTAcaca < 6:94982/147‑1 (MQ=25) aaCAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCCCGAATTGGGAGGTTTTGCCACCATCGCAATAGCC‑GGT‑T‑AAA‑CCCCGCCCACACACACcccccc > 1:112175/1‑148 (MQ=255) cAGGTCGAAGACGCTCAGTTACATGTGGACCTCCGGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCAc < 7:29279/148‑1 (MQ=255) gCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGCCATTGAGCCCTGTAGGCGCGGGGTTTCACGCGGATTCGGGGGGTTTGGCACCCGCGCATTAG‑C‑GGGTT‑AAC‑CCGGTGCTGGACCTCGCCCGCCACCCAAAGCAGGTg > 8:125642/1‑148 (MQ=255) cATGGGGACCTCCTGCCAGGTGGGTGGGTGGACATTGCGCCCTGTAGGCGCGGGTTTACCCGCGAAGGCGGAGGTATAGCCACCATCGCATTCG‑C‑GGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAg < 7:12744/147‑1 (MQ=37) ggCCAGGTTGTTGGGTGGACAGTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATACG‑C‑GGG‑T‑AAACCCGCGCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTc < 5:131879/147‑1 (MQ=38) ggtggggggggggACATTGAGCCCTGTCGGCGCGGGTTTACCCGCGAAGGCGGAGGAATAGCCACCAGCGCATTCG‑C‑GGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGAt < 5:103381/141‑1 (MQ=38) ggTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTAACCCCGAAATCGGAGGTATAGCCCCCATAGCATTAG‑C‑CGG‑TAAAA‑CCGCTCCTACACCGAGCCCCCCACCCAACCCAGGTGGCGGGGAGGGCTATAAGGCggacgg > 4:131483/1‑141 (MQ=255) ttgttgGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAg < 4:133547/148‑1 (MQ=255) ttgtggGGGGGACATTGAGCCCTGTCGGCGCGGGTTTACCCGCGAATGCGGAGGTATACCCACCATCGCATTCG‑C‑GGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGACGCCTGATAg < 2:123137/148‑1 (MQ=37) ggggTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGctct < 8:118352/147‑1 (MQ=255) ggTGGACATTGAGCCCTGTAGGCGCGGGTTTTAACCCGAATTGGGAGGTATATCCCCCAAAGCATTAG‑C‑GGG‑T‑AAACCCCCTCCGACACACAGACCCCCCCCCCAGCCACGGGGCGGGGAGGGCTATAAGGCGGCCTGATAGcgatcg > 2:19947/1‑143 (MQ=255) ttGAGCCCTGTAGGCGCGGGTTTCCCCGCGAATGCGGAGGTATCGCCACCAGCGCATGCG‑C‑GGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACgg < 1:42633/148‑1 (MQ=38) ccTGTAGGCGGGGGTTTACCCGCGAATGCGTAGGTATAGCCACCAGCGCCTGCG‑C‑GGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGGCCTGATAGCTCTCGATCGACGGGCAGgc < 1:114808/148‑1 (MQ=38) ccGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCg > 3:43085/1‑148 (MQ=255) gAGGTATAGCCACCATCGCATTCG‑C‑GGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGtt > 3:84786/1‑148 (MQ=255) gttacccccaccaCCCCATCCG‑G‑GGT‑A‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGGGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGt < 2:181284/141‑1 (MQ=255) accaTCGCATTCG‑C‑GGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGc > 1:19271/1‑148 (MQ=255) aTCGCATTCG‑C‑GGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGa > 8:42774/1‑148 (MQ=255) | AGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GGG‑T‑AAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGA > NC_002947/1126501‑1126774 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |