New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 499202	11 (0.360)	8 (0.280)	7/272	2.5	34.5%	intergenic (+46/‑250)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
	?	NC_002947	= 499271	20 (0.700)					intergenic (+115/‑181)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein

AAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCAGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTT  >  NC_002947/499145‑499418                                                                                                                               |                                                                                                                                                    aaGCTGATCTTATTGCCACATAGGGGTGCCCTAAACTTGCCCAAGCCTATGTGGGCGGGGGCATGCCCGCTAAGGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGtt                                                                                                                                <  6:160627/148‑1 (MQ=37)                              ccGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATTCCCCCGCACCGGCCGTGCCTGGGGATGTCTATTGCGGAGCCGGCCACATAGCGGGCAAGCCCCCACCCACACGGTTCGTGGTTTGCGCGCAAGGGCATTACAATACCCCCaa                                                                                                   >  8:96307/1‑147 (MQ=255)                                gAAACTTGCGGAAGCGTATGTGGGTGGGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCGGGCCTCTTCGGGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATcc                                                                                                 <  4:107623/148‑1 (MQ=255)                                                              caggCCCGCGAAGGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTcc                                                                   <  3:106536/145‑1 (MQ=255)                                                                  cccGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatgccgtacttcaccagctcc                                                               <  8:154352‑M2/148‑87 (MQ=255)                                                                   ccGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccg                                                              <  1:83231‑M2/148‑88 (MQ=255)                                                                   ccGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATcc                                                               >  4:38320/1‑147 (MQ=255)                                                                   ccGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATcc                                                               >  8:23856/1‑147 (MQ=255)                                                                        aaCGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGgatga                                                         >  3:47235/1‑148 (MQ=255)                                                                           gggCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATgg                                                      <  3:38320/148‑1 (MQ=255)                                                                               ctggcctgCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCAtt                                                  >  2:163501/1‑148 (MQ=255)                                                                                     tgctgATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCa                                            >  4:118742/1‑148 (MQ=255)                                                                                          aTCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTAcc                                       >  8:111676/1‑148 (MQ=255)                                                                                            gtctATGGCTGAGCGGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTAcccc                                     <  8:111812/147‑1 (MQ=255)                                                                                                             cccgttcgcgGGCATGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccag                                                          <  3:100078‑M2/106‑92 (MQ=255)                                                                                                              ctctTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGc                   <  1:163501/148‑1 (MQ=255)                                                                                                              ccgttcgcGGGCATGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagc                                                         >  4:100078‑M2/4‑18 (MQ=255)                                                                                                               tctTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTACATCCGGATGATGGGATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCg                  >  4:96082/1‑148 (MQ=255)                                                                                                               ggttcgCGGGCATGCCCgctcacacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgg                  >  8:149586‑M2/3‑17 (MQ=255)                                                                                                                 ttCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGtc                >  2:63715/1‑148 (MQ=255)                                                                                                                 ttCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGtc                >  6:85627/1‑148 (MQ=255)                                                                                                                    gcgGGCATGCCCgctcccacataggcttcggcaagttacgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgc              <  6:119788‑M2/147‑136 (MQ=255)                                                                                                                      gtgcaTGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctga           >  3:107623‑M2/3‑10 (MQ=255)                                                                                                                      gggCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCtctt            >  7:57742/1‑147 (MQ=255)                                                                                                                       ggCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCtcttct          >  5:157949/1‑148 (MQ=255)                                                                                                                       gccatGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctgat          >  2:136071‑M2/3‑9 (MQ=255)                                                                                                                               cGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCtttt  <  7:96307/148‑1 (MQ=255)                                                                                                                               cGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCtttt  <  5:80003/148‑1 (MQ=255)                                                                                                                               |                                                                                                                                                    AAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCAGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTT  >  NC_002947/499145‑499418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.