New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2472115	8 (0.260)	6 (0.210)	6/276	2.9	31.9%	intergenic (+19/+130)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2472313 =	18 (0.620)					coding (1783/1851 nt)	PP_2167	PhoD‑like phosphatase

CCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAA  >  NC_002947/2472175‑2472457                                                                                                                                           |                                                                                                                                                 ccccAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACACCCGCCAGCCTCCCGCTGGTACACCCGCGCCGGCCGCCCCTGTtc                                                                                                                                         >  4:83684/1‑148 (MQ=255) ccccAAGCCGGGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTtc                                                                                                                                         <  7:36125/148‑1 (MQ=255)    cAATCCGGTTTCGGTGGGGTTTTACCCGCGATGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTtcatc                                                                                                                                      <  2:50274/148‑1 (MQ=255)          ggTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCaaaaa                                                                                                                                 >  3:142463/1‑147 (MQ=255)                             ccGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCa                                                                                                             >  8:58961/1‑148 (MQ=255)                                                    gTAAACACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAACCACCTGTCCCCGCCCGGCACCATTCCCCAGCCGTTCCCCGGc                                                                                      >  6:1702/1‑148 (MQ=255)                                                      aaaaaCTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCt                                                                                    >  6:154034/1‑148 (MQ=255)                                                       aaaaCTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCCCCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCtt                                                                                   >  4:97719/1‑148 (MQ=255)                                                        aaaCTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTg                                                                                  >  1:164503/1‑148 (MQ=255)                                                                 tgactccaaccgcgaagccttccatgatctggtcaatgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTg                                                                         >  7:130383‑M2/75‑148 (MQ=255)                                                                                   tttAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCaccacc                                                       >  3:78581/1‑148 (MQ=255)                                                                                   tttAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCaccacc                                                       >  6:120297/1‑148 (MQ=255)                                                                                     tccatgatctggtcaatgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCt                                                      >  1:139249‑M2/55‑147 (MQ=255)                                                                                                       ccccGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAACCACCTGTCCCAGCCCGGCACCATTCCACCGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCCCCACCTCCCTTTCTCGGCGCTTgc                                    >  3:51811/1‑146 (MQ=255)                                                                                                        gctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGt                                   >  8:63453‑M2/36‑147 (MQ=255)                                                                                                           gCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAAc                               <  3:97719/148‑1 (MQ=255)                                                                                                                           atagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGgc                                          >  7:148759‑M2/17‑121 (MQ=255)                                                                                                                            tagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGgcg                                         <  8:148759‑M2/106‑1 (MQ=255)                                                                                                                              acCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGcgcg            >  5:135884/1‑148 (MQ=255)                                                                                                                               cctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTAAGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCgg           >  6:112710‑M2/13‑148 (MQ=255)                                                                                                                                ccGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGt          >  2:101710/1‑148 (MQ=255)                                                                                                                                ccGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGt          >  1:17304/1‑148 (MQ=255)                                                                                                                                ccGCGCCGGCCGCCCCTGTGCATCAAAAAACACCTGTCCCAGCCCAGCACCCTTCCACAGCCCTTCCCCGCCCGTGCTGAGGCTGGGCGTACGCGGCACCCCCACCAATTCACGCCGCTAGGTAAACCAGTTGAGCGGCGAGCGCGGt          >  8:72785/1‑148 (MQ=255)                                                                                                                                 cgcgCAGGCCTCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTg         <  7:134081/148‑1 (MQ=255)                                                                                                                                        gccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCTGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACaa  <  7:75817‑M2/145‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                 CCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAA  >  NC_002947/2472175‑2472457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.