| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 93.5% | 143.7 / 3.1 | 46 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base A (21/22); total (22/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGT‑A‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGC > NC_002947/278595‑278882 | aTGTCGCTACAGCTGATCGCGACAGACATGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGt > 8:241275/1‑148 (MQ=255) tGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGt < 6:184978/147‑1 (MQ=255) cGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACACGAGGTGCCGGGCTCTTCGCGGGT‑a‑aa < 1:4255/148‑2 (MQ=255) aCAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGTTGCCGGGCTCTTCGCGGGT‑A‑A‑accctc > 1:305393/1‑145 (MQ=255) cAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTc < 7:114332/149‑1 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTacac < 2:1023/149‑1 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTac < 3:311686/147‑1 (MQ=255) tCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTacac < 6:82635/148‑1 (MQ=255) cgagACTGACGTGTGCTGGTTCTGTGGGCCGGTATATATACCCTAATGTTTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGTTGCCGGTCTCTTCGCTGGTAA‑A‑CCCGCTCCTacaca < 6:282561/145‑1 (MQ=255) aCGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTc > 7:291279/1‑148 (MQ=255) aCGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTc < 6:375621/148‑1 (MQ=255) cGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGt < 6:55141/122‑1 (MQ=255) gtgtGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCAGCTCGTACACACATGGCTCatg > 3:234369/1‑147 (MQ=255) tgtgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCCCGCCTACACCCAAGCCTc > 4:65421/1‑145 (MQ=255) gCTGGTCCGGTTGTCCGTTATATATACACTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGAt < 6:43358/147‑1 (MQ=255) gCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATc > 6:284361/1‑148 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCtgtg < 1:392336/148‑1 (MQ=255) ggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTg < 7:241275/149‑1 (MQ=255) cggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGTGTAA‑A‑CCCGCTCCTAACCACATGCCTCAAGATCTGTGCACTGTAGGAGc > 8:362110/1‑149 (MQ=255) gtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg < 7:368558/149‑1 (MQ=255) tatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGt < 3:99359/148‑1 (MQ=255) taCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCAGGGCTCTTCTCGGGTAA‑A‑AAAGCTCCAAAACACATGCCTCAAGATCTGTACCCAGTAAGAGCGGGTTTaa > 5:393192/1‑147 (MQ=255) attgtttttTAATATTTTTATGAAGAAAATTTTTTTTATATTTTTAGAAGGGTGATTTGTTACT‑GTTGTGAAGGGCTCTGCCGTGTT‑ATA‑CCCGTTCCTACACACATGCCTCATGATCTGTGCACTGTAGGAGCGTGTTTACCcgcgta < 8:156988/144‑3 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAccc < 1:11838/144‑1 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAccc > 2:11838/1‑144 (MQ=255) aTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGaaa < 7:232958/149‑1 (MQ=255) tGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑ACCGCTAATTAACAAATGGCTAAATATCTGTGGCCTGTAGGAGCGGGGTTACCCGCGAAAg > 3:178896/1‑149 (MQ=255) ataAAATTTTTATTAATTAATTTTTTTTATTTTTTATTTATGGGGTATTTGTTACT‑TTGGTGCCGGGCTCTTCGGGGTTAA‑A‑CCCGCTCCTACAAACATGCCTCAAGTTCTGTGCACTGTTGTTGGGGTTTTACCCGCGAAAGGGCCg < 2:305393/148‑1 (MQ=255) aaaaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGCTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCACCTACACAAATGCCAAAACATATGTGCACTGTAAGAGCCGGTTTAACCGCCAAAGGGCCggc > 3:186626/1‑147 (MQ=255) aTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAc > 4:38461/1‑129 (MQ=255) aactaactTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑ACCGCTCCTACACACATGCCTCAAGATCTGTGCACAGTAGGACCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTc > 5:104771/1‑148 (MQ=255) tttttGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAgg > 1:22910/1‑134 (MQ=255) tttttGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAgg < 2:22910/134‑1 (MQ=255) tttGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCg > 1:56390/1‑147 (MQ=255) atTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑ACCCCGCCTAAACACAAGCCACAAAAAGTTTGCAAGTTATGAGGGGGTTTAACCGCGCAAAGGCCGGCACAGGTTTAAAAGGGGGCCGCACTACCGa > 6:253504/1‑148 (MQ=255) atTAATATATGGGGTTTTTGTTACA‑GCGGGCCCGGGCTCTTCGCGGGT‑A‑ACCCCGCTCCTACCCACATGCCTCAAGATCTGTCCACTTCAGGAGGGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGa < 6:237329/148‑1 (MQ=255) taGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAAc < 2:56390/148‑1 (MQ=255) gAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACtt < 5:284361/148‑1 (MQ=255) gATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCaa > 5:333252/1‑147 (MQ=255) gttGTTACA‑GCGGTGCCGGGCTCTGCGCGGGTAA‑A‑CCCGCTCCTCCCCACATGCCTCACGACCTGTGCACTGTAGGAGCGGGTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAAc < 4:234369/148‑1 (MQ=255) cA‑GCGGTGCCGGGCGGTTCGCGGGTAA‑A‑CCCGCTCCTACCCACTTCCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc < 3:65421/148‑1 (MQ=38) a‑gagGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc > 6:322929/1‑147 (MQ=255) agGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTAc > 7:255934/1‑149 (MQ=255) agGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACAAACATGCCTCAAGATCTGTGCACAGTAGGAGCGGGTTTACCCCCGAAAGGGCCGGGACAGGGTTAAACGGCGGGCCCAGGCCCCGGGACAATGCCCAAGAACTTCCCCGTa > 6:5142/1‑148 (MQ=255) tGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGc > 8:175652/1‑148 (MQ=255) cGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAg > 5:77961/1‑117 (MQ=255) gggCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAgg < 6:77961/117‑1 (MQ=255) ttCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc < 2:264063/132‑1 (MQ=255) ttCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc > 1:264063/1‑132 (MQ=255) cgcgGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGgc < 8:291279/148‑1 (MQ=255) | ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACA‑GAGGTGCCGGGCTCTTCGCGGGT‑A‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGC > NC_002947/278595‑278882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |