| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 3,845,705 | +G | intergenic (‑72/+26) | PP_3394 ← / ← PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,845,703 | 1 | . | G | 98.1% | 172.0 / ‑3.3 | 52 | intergenic (‑70/+28) | PP_3394/PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (31/20); total (32/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
GGCTGCTGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑C‑GGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCACCAAGCGC > NC_002947/3845556‑3845844 | ggCTGCTGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTcg‑c‑g > 1:353833/1‑149 (MQ=255) gctgctGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑C‑gg < 1:240369/149‑1 (MQ=255) tgTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑C‑gggctga > 1:179395/1‑144 (MQ=255) gTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑C‑gggctga > 5:35775/1‑143 (MQ=255) tCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGGGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGAt < 1:93999/148‑1 (MQ=255) tCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGAt < 3:31350/148‑1 (MQ=255) tggcTTGCAGAGCCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCa > 5:23456/4‑148 (MQ=255) ttGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCa > 5:394502/1‑148 (MQ=255) gCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGa > 2:266501/1‑149 (MQ=255) cAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGAt > 7:326639/1‑149 (MQ=255) gCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAg > 7:277425/1‑139 (MQ=255) gCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAg < 8:277425/139‑1 (MQ=255) gCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATgg < 5:8626/148‑1 (MQ=255) tGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATc > 8:340972/1‑126 (MQ=255) tGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATc < 7:340972/126‑1 (MQ=255) cAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGc < 2:353343/148‑1 (MQ=255) aaGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGc < 6:23456/147‑1 (MQ=255) aaGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑C‑ggg > 5:53892/1‑116 (MQ=255) aGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGccc > 6:279020/1‑148 (MQ=255) aGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑C‑gggc < 6:53892/117‑3 (MQ=255) aTCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCgcgc < 6:394502/148‑1 (MQ=255) tCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCAACGCGGTCTCTCTGTCTGAAGCGATGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTTTTTCGAG‑GGCTCATCAAACCTCAGCCACGATGCAACAGccagagc > 5:213657/1‑142 (MQ=255) ggCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAg < 5:162721/148‑1 (MQ=255) ggCCGACTTCATTGATTGTTATTGTGGCCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCAACGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAg < 5:79423/148‑1 (MQ=255) attgattgTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACg > 2:253729/1‑149 (MQ=255) ttgattgTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCAc > 5:328779/1‑147 (MQ=255) attgttattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACgca > 5:165215/1‑147 (MQ=255) tgttattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGTA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCg > 8:78610/1‑99 (MQ=255) tgttattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCg < 7:78610/99‑1 (MQ=255) ttattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACgcagca > 5:316223/1‑146 (MQ=255) ttattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACgcagca > 5:358997/1‑146 (MQ=255) ttgtCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGAGTGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAggtgg > 1:297272/1‑149 (MQ=255) gtCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTc > 7:287043/1‑148 (MQ=255) tCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTc > 1:237447/1‑147 (MQ=255) cgGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGgc > 1:190347/1‑149 (MQ=255) ggTCTCTCTGTCTTATGCGTTGCGCAAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTCATCCATCGTCTGCCAGGATGTATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGgc < 6:316223/148‑1 (MQ=255) ggTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGgc < 6:165215/148‑1 (MQ=255) tctgtctgAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCgccgagc > 2:111526/1‑149 (MQ=255) gtctgAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCgccgag < 6:358997/145‑1 (MQ=255) cGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCACGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCg > 5:81493/1‑146 (MQ=255) ttGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGc < 1:266501/149‑1 (MQ=255) gcCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATTGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCgtg > 5:242278/1‑148 (MQ=255) tgtgCTGGA‑TCCCGGGCCGAAACGACGGTTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGCATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTcgc < 8:84119/146‑1 (MQ=255) ggA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCAATCGTCAGCCACCATGGATCAGCCCGCGCCCTGCCAGGCCCGAGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGAAtc > 8:285891/1‑147 (MQ=255) ggA‑TGACGGGAAGAAAAGACGTGTTTCG‑CGGGCTGATACATCGTCACCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGAGCACGCAGCAACAGGTGGTCAAGCACGCGCCGAGCCGACAGCGATAGCGAGTGCCGGTCGCGCATg > 8:291179/1‑148 (MQ=255) gA‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCgccgagccg > 5:280043/1‑118 (MQ=255) a‑TGACGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCgccgagccga < 6:280043/118‑1 (MQ=255) aCGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGa > 6:136436/1‑147 (MQ=255) aCGGGCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATg < 2:297272/149‑1 (MQ=255) gggCAGAAAAGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCgag > 1:110646/1‑120 (MQ=255) aaaaGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAAtt > 3:257422/1‑148 (MQ=255) aaaaGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGAGGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTc > 1:110134/1‑149 (MQ=255) aaaGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTc < 8:287043/148‑1 (MQ=255) aaGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCAc < 2:237447/149‑1 (MQ=255) aGACGTGTTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCa > 6:2462/1‑147 (MQ=255) gtgtTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGCGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGCATTCACCAAgc > 7:141780/1‑149 (MQ=255) tgtTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCACCAAgcg > 2:123182/1‑149 (MQ=255) gtTTCG‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCACCAAgcgc > 3:333581/1‑149 (MQ=255) | GGCTGCTGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGA‑TGACGGGCAGAAAAGACGTGTTTCG‑C‑GGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCACCAAGCGC > NC_002947/3845556‑3845844 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |