Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	1,419,549	+C	intergenic (‑38/+98)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,419,548	1	.	C	100.0%	82.5 / NA	26	intergenic (‑37/+99)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (11/15);  total (11/15)

GCCGGGTTCGATGCGGAACAGCGGGTGAGTG‑TTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTG  >  NC_002947/1419413‑1419671                                                                                                                                          |                                                                                                                              gCCGGGTTCGATGCGGAACAGCGGGTGAGTG‑TTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCggg                                                                                                                  >  1:153144/1‑148 (MQ=255)          gATGCGGAACAGCGGGTGAGTGTTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGc                                                                                                         >  7:55131/1‑149 (MQ=255)           aTGCGGAACAGCGGGTGAGTG‑TTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTc                                                                                                       >  1:192523/1‑149 (MQ=255)              cGGAACAGCGGGTGAGTG‑TTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCca                                                                                                    >  1:119913/1‑149 (MQ=255)                gAACAGCGGGTGAGTG‑TTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCca                                                                                                    >  4:247512/1‑147 (MQ=255)                 aaCAGCGGGTGAGTG‑TTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAg                                                                                                 >  2:112919/1‑149 (MQ=255)                 aaCAGCGGGTGAGGG‑TTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAg                                                                                                 <  7:88201/149‑1 (MQ=255)                        ggTGAGTG‑TTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACtgt                                                                                          <  2:119913/149‑1 (MQ=255)                         gTGAGTG‑TTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGTCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACtgtg                                                                                         <  3:247512/149‑1 (MQ=255)                            aGTG‑TTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCa                                                                                       <  2:153144/148‑1 (MQ=255)                              tg‑ttgtTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGt                                                                                     <  5:329331/148‑1 (MQ=255)                                 ttgttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGc                                                                                   <  8:241259/148‑1 (MQ=255)                                       tCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACg                                                                             <  3:356181/148‑1 (MQ=255)                                        cGCCTTGGTAGAAGCAGGTCTTGCCTACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACgg                                                                            <  3:257918/148‑1 (MQ=255)                                                  gAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGAc                                                                  <  2:192523/148‑1 (MQ=255)                                                  gAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGAc                                                                  <  8:55131/148‑1 (MQ=255)                                                       aGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgtg                                                            <  7:150782/149‑1 (MQ=255)                                                       aGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgtg                                                            >  8:150782/1‑149 (MQ=255)                                                        ggTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTgg                                                           >  2:170529/1‑149 (MQ=255)                                                         gTCTTGCCGACTGTGGGGGGTTCTGTTGTGTTGTCGGGGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCTAGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgtg                                                            <  1:112919/149‑1 (MQ=38)                                                               ccGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCTGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCggg                                                    <  3:145874/149‑1 (MQ=255)                                                                  aCTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGt                                                 <  1:170529/149‑1 (MQ=255)                                                                                tgttgtgttgTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACCCCCGCTACCACAAGTACTGTTCAGTTAGTTAACGCAGTGGTGAACCCTTGGGAGCCGGCGTGACCGCGAACAGGc                                   >  3:237354/1‑149 (MQ=255)                                                                                  ttgtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAg                                                        >  5:303362/1‑126 (MQ=255)                                                                                   tgtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGc                                                       <  6:303362/126‑1 (MQ=255)                                                                                                                 cTGGATTCTGGGTTGCCTGGGCTGGCCTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGCAGAGGCCTGACCTGCTCATGCAAGGTGTGAGGCTCtgtg  >  7:102712/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                              GCCGGGTTCGATGCGGAACAGCGGGTGAGTG‑TTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTC‑‑GCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTG  >  NC_002947/1419413‑1419671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑