| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,988,840 | 0 | C | T | 29.6% | 116.1 / 60.8 | 81 | intergenic (+134/‑412) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| Reads supporting (aligned to +/- strand): ref base C (21/36); new base T (12/12); total (33/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTAT > NC_002947/5988698‑5988988 | gCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGgcg < 6:1754/148‑1 (MQ=255) cGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGgcgc < 3:306432/148‑1 (MQ=255) tttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGcat > 3:157768‑M2/66‑148 (MQ=255) ttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGcat < 7:18269‑M2/84‑2 (MQ=255) tcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGggcatgt > 3:82602‑M2/64‑146 (MQ=255) agcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGgggcatgtc < 1:234463‑M2/87‑5 (MQ=255) aGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCt < 7:264678/147‑1 (MQ=255) gCCTTTTCGCGCGTGCCTTGAGGGTTGTAGGGCCTTTGAGATTGGGCGCCGCCCGCGCGGCGCTGAGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGat < 2:232522/149‑1 (MQ=37) ctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTggggcatgtct > 5:171344‑M2/57‑139 (MQ=255) tgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGtctc < 6:171344‑M2/89‑1 (MQ=255) ggggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGatat < 8:260516‑M2/94‑1 (MQ=255) ttttGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATc > 8:27543/1‑149 (MQ=255) ttGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATc < 8:183713/147‑1 (MQ=255) gcgcGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATc < 1:171761/144‑1 (MQ=255) gcgcGTGCCTAGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATc > 2:171761/1‑144 (MQ=255) gcgTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGcgtcg > 1:315521/1‑148 (MQ=255) ttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGTGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGcgtcgt < 3:121749‑M2/102‑1 (MQ=255) cgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTac < 4:157768‑M2/104‑1 (MQ=255) cTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCt < 2:238034/129‑1 (MQ=255) cTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCt > 1:238034/1‑129 (MQ=255) cTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTacaa > 5:241436/1‑147 (MQ=255) agagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAgg < 1:155871‑M2/112‑1 (MQ=255) gatGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCgg < 8:127982/147‑1 (MQ=255) tttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGGCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCgg > 1:108707‑M2/34‑149 (MQ=255) ttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGt < 7:152344‑M2/116‑1 (MQ=255) gTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTc < 4:181071/148‑1 (MQ=255) tAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcgc < 2:315521/149‑1 (MQ=255) cagcgcctgtgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTcg > 5:198352‑M2/31‑148 (MQ=255) gggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTc > 3:269254‑M2/23‑139 (MQ=255) gggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTc < 4:269254‑M2/117‑1 (MQ=255) tgAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCgg < 7:218348/136‑1 (MQ=255) tgAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCgg > 8:218348/1‑136 (MQ=255) atcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAgg > 1:151419‑M2/18‑129 (MQ=255) atcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAgg < 2:151419‑M2/112‑1 (MQ=255) aTTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGcac < 7:27543/149‑1 (MQ=255) aTTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGCGCGCGACCGcc > 5:383463/1‑143 (MQ=255) ttGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGCGCGCGACCGCCt < 6:383463/143‑1 (MQ=255) gagcgcCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGC‑agg > 7:65627/3‑149 (MQ=14) ggCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCt > 5:33553/1‑90 (MQ=255) agcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTgg > 5:307294‑M2/14‑142 (MQ=255) gcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTg < 6:33553‑M2/78‑1 (MQ=255) gcgccgcccgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑agg < 6:124949‑M2/135‑1 (MQ=255) cgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAgg > 4:82369‑M2/5‑116 (MQ=255) cgcgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAgg < 3:82369‑M2/112‑1 (MQ=255) cgCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCa < 2:94887‑M2/147‑1 (MQ=255) cggcgCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCGTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGa < 3:58707/149‑1 (MQ=255) cgcgGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGaaacaaac < 2:155097/148‑1 (MQ=255) gcgGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATAGGCCAGaaacaaac > 6:48255/1‑147 (MQ=255) gggTAAACCC‑GCTCCTACGTTTGTTTCGGGGCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATTTGGCGTCGTTCAAACTAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAg > 7:271853/1‑149 (MQ=39) gggTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGCAACAAACGTAg > 7:277170/1‑149 (MQ=255) ggTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCCCGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCGGGCAC‑AGGAGGGATTGGCCAGAACCAAACGTAgg > 7:163323/1‑149 (MQ=255) ggTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAg > 8:13153/1‑148 (MQ=255) ggTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTAGCGCGCGCCTGGCAC‑AGGAGGGATTGGGCAGAAACAAAGGTAg > 8:366692/1‑148 (MQ=255) gTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCAGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAg > 7:212113/1‑147 (MQ=255) caaaCCC‑GCTCCTACGTTAGTTTCCGGCCAGATATTCCTG‑TGGCACGCGCACCCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAg < 7:366692/148‑1 (MQ=25) aaCCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGc < 1:263997/148‑1 (MQ=255) aCCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGc < 8:103466/128‑1 (MQ=255) aCCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGc > 7:103466/1‑128 (MQ=255) cc‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCggg < 5:98885/148‑1 (MQ=255) c‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGtt > 2:46656/1‑149 (MQ=255) cTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGCGCGGGTTTAccc < 4:90922‑M2/149‑4 (MQ=255) cTACGTTTGTTTCGGGCCAATTATTCCTGCGGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGC‑AGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAccc > 1:35753/1‑149 (MQ=2) cGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcg > 3:363035‑M2/1‑143 (MQ=255) gtttgtttCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGTCAGAAACAAACGTAGGAGCGGGTTTAcccgcg < 4:227356‑M2/148‑7 (MQ=255) gtttgtttCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcg < 2:47562‑M2/148‑7 (MQ=255) gtttgtttCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgc < 6:45088‑M2/147‑6 (MQ=255) gtttgtttCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGC‑AGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCcgcg > 7:104576/1‑147 (MQ=11) tttgtttCGGGCCAATTATTCCTG‑CGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGC‑AGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAg > 1:164996/1‑149 (MQ=11) tttCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgc < 7:181783‑M2/149‑13 (MQ=255) ggCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACCAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAccc > 1:75482‑M2/1‑133 (MQ=255) ggCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAccc < 2:75482‑M2/135‑4 (MQ=255) ccAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑ATGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcg < 6:44764‑M2/148‑19 (MQ=255) aTTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcg < 4:288753‑M2/149‑26 (MQ=255) cTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGAGTTTAcccgcgaagcgccgcgcgggcggcgct < 6:34407‑M2/147‑28 (MQ=255) cTG‑GGGGCCGCGCCCGCCAGCCCCCGGGCGCACGCCGCGATATCGCGTCGTCCAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcg > 8:163323‑M2/1‑120 (MQ=255) gcgcACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATgg < 3:288753/149‑1 (MQ=255) gcgcgcGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGC‑AGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcg < 4:14011‑M2/149‑42 (MQ=255) aCGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGgcgc < 1:47562/149‑1 (MQ=255) gcgAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGccc < 7:13153/149‑1 (MQ=255) gcgACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGC‑AGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTAcccgcgaagcgccgcgcgggcggcgctcgatctcacaggcgct < 6:216689‑M2/147‑44 (MQ=255) gCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGAGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCaaa < 5:34407/148‑1 (MQ=255) cccccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCaaaaa < 8:181783/149‑1 (MQ=255) cccccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCaaaaa < 1:46656/149‑1 (MQ=255) cccccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCAGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCaaaaa < 8:212113/149‑1 (MQ=255) cTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTAt > 8:103324/1‑149 (MQ=255) | GCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCC‑GCTCCTACGTTTGTTTCGGGCCAGTTATTCCTG‑TGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCAC‑AGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTAT > NC_002947/5988698‑5988988 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |