breseq  version 0.27.1  revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 134,057 2 bp→CT coding (2443‑2444/2598 nt) acnB → aconitate hydratase 2; aconitase B; 2‑methyl‑cis‑aconitate hydratase
MC JC 257,908 Δ776 bp [crl] [crl]
RA 668,742 C→G E99Q (GAA→CAA)  rsfS ← ribosomal silencing factor
RA 932,585 G→A intergenic (‑535/‑10) trxB ← / → lrp thioredoxin reductase, FAD/NAD(P)‑binding/leucine‑responsive global transcriptional regulator
RA 1,196,220 C→T H366H (CAC→CAT)  icd → isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase
RA 1,196,232 C→T T370T (ACC→ACT)  icd → isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase
RA 1,196,245 T→C L375L (TTA→CTA)  icd → isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase
RA 1,196,247 A→G L375L (TTA→TTG)  icd → isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase
RA 2,173,363 Δ2 bp intergenic (‑1/+1) gatC ← / ← gatC pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,261,480 G→A R296C (CGT→TGT)  fruK ← fructose‑1‑phosphate kinase
RA 2,513,351 C→A L104M (CTG→ATG)  nupC → nucleoside (except guanosine) transporter
JC JC 2,536,312 Δ1 bp :: IS186 (+) +6 bp :: Δ1 bp coding (479‑484/510 nt) crr → glucose‑specific enzyme IIA component of PTS
RA 2,866,702 Δ1 bp coding (850/993 nt) rpoS ← RNA polymerase, sigma S (sigma 38) factor
RA 3,560,455 +G intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 4,212,959 G→C intergenic (+13/‑81) rrlE → / → rrfE 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon
RA 4,212,973 Δ1 bp intergenic (+27/‑67) rrlE → / → rrfE 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon
MC JC 4,233,804 1557 bp→83 bp coding (47‑1603/1650 nt) pgi → glucosephosphate isomerase
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 582673 584758 2086 53 [52] [52] 53 [ybcY]–[ompT] [ybcY], ybcY, tfaX, appY, [ompT]
* * ÷ NC_000913 770730 771198 469 63 [50] [52] 54 mngB/cydA alpha‑mannosidase/cytochrome d terminal oxidase, subunit I
* * ÷ NC_000913 997500 997984 485 53 [52] [51] 53 [ssuE]–[elfA] [ssuE], [elfA]
* * ÷ NC_000913 1196256 1212897 16642 54 [52] [48] 54 [icd]–[ycgX] 27 genes
[icd], ymfD, ymfE, lit, intE, xisE, ymfI, ymfJ, cohE, croE, ymfL, ymfM, oweE, aaaE, ymfR, beeE, jayE, ymfQ, stfP, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, [ycgX]
* * ÷ NC_000913 1526702 1527760 1059 53 [52] [52] 53 [yncG]–yncH [yncG], yncH
* * ÷ NC_000913 1978244 1979755 1512 54 [49] [52] 54 insB1–[uspC] insB1, insA, [uspC]
* * ÷ NC_000913 2033358 2034132 775 53 [52] [52] 53 [yedR]–[yedS] [yedR], [yedS]
* * ÷ NC_000913 2468998 2470783 1786 53 [51] [51] 54 [gtrB]–gtrS [gtrB], gtrS
* * ÷ NC_000913 2774251 2775458 1208 53 [52] [52] 53 [yfjW] [yfjW]
* * ÷ NC_000913 2785820 2787014 1195 54 [52] [52] 54 [ileY]–[ygaQ] [ileY], [ygaQ]
* * ÷ NC_000913 2903491 2904121 631 53 [52] [49] 54 ygcE/queE putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis
* * ÷ NC_000913 2994703 2996033 1331 56 [51] [47] 53 [ygeK]–[ygeO] [ygeK], ygeN, ygeN, [ygeO]
* * ÷ NC_000913 3267827 3269733 1907 53 [49] [51] 53 yhaB–yhaC yhaB, yhaC
* * ÷ NC_000913 3286935 3287531 597 53 [51] [52] 53 [agaI]–[yraH] [agaI], [yraH]
* * ÷ NC_000913 3360724 3361301 578 53 [52] [52] 53 [gltF] [gltF]
* * ÷ NC_000913 3769279 3770284 1006 58 [45] [50] 53 yibV–[yibH] yibV, yibV, yibU, yibU, [yibH]
* * ÷ NC_000913 3796868 3800422 3555 53 [52] [52] 53 [waaC]–[waaY] [waaC], waaL, waaU, waaZ, [waaY]
* * ÷ NC_000913 3804056 3805214 1159 56 [52] [52] 53 [waaB]–[waaP] [waaB], waaS, [waaP]
* * ÷ NC_000913 4268422 4269404 983 53 [52] [52] 53 yjbS yjbS
* * ÷ NC_000913 4541501 4542028 528 53 [52] [44] 57 [fimB] [fimB]