Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	331560	332244	685	34 [33]	[32] 34	betT/yahA	choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase

ATTTGGCCGCAGCAATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGAATGTTCAATAAGTTTAGTCTTATTTAATGTAAATATTGCTGATCATTTGAAATGACGCATTATTCATGAGAAATGTGTATCGTAAATCAACTGAAATTAACGCAACCATTTGT  >  NC_000913/331263‑331781                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                               aTTTGGCCGCAGCAATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCGGGGAACCTGCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGATGATCACAGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACg                                                                                                                                                                                                                                <  1:738985/297‑1 (MQ=255)          cagcaATATTCGGTGCCGGGCGTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATAc                                                                                                                                                                                                                    <  1:574286/300‑1 (MQ=255)            gcaATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAACCCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGTTACGTTCTATCTATACGGt                                                                                                                                                                                                                 >  1:607062/1‑301 (MQ=255)             caATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACgg                                                                                                                                                                                                                  <  1:39230/299‑1 (MQ=255)                   ttggTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTTCCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGccc                                                                                                                                                                                                          <  1:629081/299‑1 (MQ=255)                                   cctaccGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTGCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATtgatg                                                                                                                                                                                          <  1:667893/301‑1 (MQ=255)                                          cgcacgcaGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCAGGTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTAcc                                                                                                                                                                                    <  1:81022/300‑1 (MQ=255)                                                  gCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCTCGCCATGTCTGCATATGGCGCTGTTTCCCATACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTAACAGacaacaa                                                                                                                                                                           >  1:196549/1‑300 (MQ=255)                                                    ggTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGat                                                                                                                                                                         >  1:304323/1‑301 (MQ=255)                                                     gtgaaTCGACCTACTACCGACTAGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGAACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGat                                                                                                                                                                         <  1:200672/297‑1 (MQ=255)                                                                                        gtataaGGAAGCAAGGGCAACGACCGGATGGACTCCAGCAAAGAGCAGGCGATCACCGCTCTTCTTTACCCGTACGAGCGGCACCTTAGCTTTATTCATCTCCATCGTGAAGCGCCGGGCCCTAGCGTGATGTTCCCGTAGGCGTGATTGTTATTGCATAAAACCGCGCTATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATc                                                                                                                                                                                                                         <  2:217574/213‑1 (MQ=255)                                                                                               gCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATAc                                                                                                                                                                                                                    <  2:539371/215‑1 (MQ=255)                                                                                                        gCAACGAGGTGAGAGACTACAGCAAAGAGTAGTGGATCACCGATATTCTGGACCAGTACGAGCGGGACCTTAACTTTATTCATCTCCATCGTGACGCGCCGGTCCATGGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTCCCTCTTGATACGTTATATCTATACGGTTAAGccc                                                                                                                                                                                                          <  2:689378/216‑1 (MQ=255)                                                                                                         cAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGccc                                                                                                                                                                                                          <  2:607043/215‑1 (MQ=255)                                                                                                             naCCTGATGGACTACAGCAAAGAGCAGATGATCACCTATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTAt                                                                                                                                                                                                   <  2:563959/217‑1 (MQ=255)                                                                                                              aCCTGAGTGACTACGGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTCACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCGCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCGTAGTAt                                                                                                                                                                                                   <  2:266062/217‑1 (MQ=255)                                                                                                                              cAAAGAGCAGGTGAGCAGCGATATTCGTGAACAGTACGAGCGGGACATTAACGTTATTCATCTCCATCGTGAAGCGCAGGGCCATAGCGTGATGGTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTAc                                                                                                                                                                                     <  2:223741/215‑1 (MQ=255)                                                                                                                                     cAGGTGATCACCGTTATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGAATGTTCAATAAGTTTAGTCTTAttt                                                                                          <  1:420380/299‑1 (MQ=255)                                                                                                                                     cAGGTGATCACCGATATGCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGAATGTTCAATAAGTTTAGTCTTAttt                                                                                          <  1:165959/299‑1 (MQ=255)                                                                                                                                                                     gCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGAATGTTCAATAAGTTTAGTCTTATTTAATGTAAATATTGCTGATCATTTGAAATGACGc                                                         <  1:428219/300‑1 (MQ=255)                                                                                                                                                                                              natcggtaaGCGCCTGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCAGGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGaa                                                                                                                  <  2:606219/211‑1 (MQ=255)                                                                                                                                                                                                            gggCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGAATGTTCAATAAGttt                                                                                                    >  2:369963/1‑218 (MQ=255)                                                                                                                                                                                                                 aTAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGAATGTTCAATAAGTTTAGTCt                                                                                               <  2:439127/218‑1 (MQ=255)                                                                                                                                                                                                                      ttGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGAATGTTCAATAAGTTTAGTCTTAttt                                                                                          <  2:196544/217‑1 (MQ=255)                                                                                                                                                                                                                      ntgtgtttCCCTGAGTCGTGCTTCTTATTGCATCATACCGCAGCATGTCTGCATGTTTCGCTGTGTTTCCGATCTCTTGATACGTTATATCTATTCGGTTAAGCCCTTAGTATCTATTGATGATTAGCAGACAACAGATAATAAAAAAGCAAAAAACTATTTCAGCCCAAACCCTACATGTTGTCTGTTGCGAATGTTCAATAAGGTTAGTCTAAttt                                                                                          <  2:689690/212‑1 (MQ=255)                                                                                                                                                                                                                             tCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGt                                                                                                                                                                                                                 >  2:274761/1‑92 (MQ=255)                                                                                                                                                                                                                             tCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGt                                                                                                                                                                                                                 <  1:274769/92‑1 (MQ=255)                                                                                                                                                                                                                                  gACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGAATGTTCAATAAGTTTAGTCTTATTTAATGTAAatat                                                                               <  2:102435/217‑1 (MQ=255)                                                                                                                                                                                                                                                   gCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGCTACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGTCTGTTGCGAATGTTCACTAAGTTTAGTCTTATTTAATGTAAATATTGCTGATCATTTGAAATg                                                             >  2:273813/1‑218 (MQ=255)                                                                                                                                                                                                                                                   gCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAAc                                                                                                                                       >  2:543587/1‑144 (MQ=255)                                                                                                                                                                                                                                                   gCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAAc                                                                                                                                       <  1:543601/144‑1 (MQ=255)                                                                                                                                                                                                                                                   gCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGAATGTTCAATAAGTTTAGTCTTATTTAATGTAAATATCGCTGATCATTTGAAATGACGCATTATTCATGAGAAATGTGTATCGTAAATCAACTGAAATTAACGCAACCATTTGt  <  1:273821/277‑1 (MQ=255)                                                                                                                                                                                                                                                                                               ctctTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTAc                                                                                                                                                                                     >  2:227943/1‑54 (MQ=255)                                                                                                                                                                                                                                                                                               ctctTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTAc                                                                                                                                                                                     <  1:227950/54‑1 (MQ=255)                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                               ATTTGGCCGCAGCAATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGAATGTTCAATAAGTTTAGTCTTATTTAATGTAAATATTGCTGATCATTTGAAATGACGCATTATTCATGAGAAATGTGTATCGTAAATCAACTGAAATTAACGCAACCATTTGT  >  NC_000913/331263‑331781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑