breseq  version 0.27.1  revision 87c22d663cc3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,296,268	0	T	C	35.4%	59.8 / 41.4	51	intergenic (+474/+168)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*	NC_000913	4,171,728	0	C	T	31.4%	130.5 / 91.3	120	noncoding (92/120 nt)	rrfB	5S ribosomal RNA of rrnB operon
*	NC_000913	4,296,286	0	C	T	20.4%	91.8 / 22.1	50	intergenic (+492/+150)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	12 (0.160)	10/488	6.0	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
*	?	NC_000913	= 1978502	0 (0.000)	11 (0.150)	9/480	6.3	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein
*	?	NC_000913	3216165 =	81 (1.030)	4 (0.050)	4/476	8.8	4.7%	coding (327/765 nt)	yqjH	putative siderophore interacting protein
	?	NC_000913	3216247 =	84 (1.120)					coding (245/765 nt)	yqjH	putative siderophore interacting protein
*	?	NC_000913	2264494 =	88 (1.120)	3 (0.040)	3/488	9.6	3.3%	coding (632/1182 nt)	setB	lactose/glucose efflux system
	?	NC_000913	2264512 =	89 (1.150)					coding (650/1182 nt)	setB	lactose/glucose efflux system