| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 630079 | 20 (0.980) | 5 (0.260) | 5/284 | 1.5 | 19.6% | coding (186/2106 nt) | cstA | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| ? | NC_000913 | = 630098 | 22 (1.140) | coding (205/2106 nt) | cstA | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
CTGTAATGGGAGCATTTGCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATG > NC_000913/629934‑630226 | ctGTAATGGGAGCATTTGCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTgg > 2:230440/1‑150 (MQ=255) ctctGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGAcgc > 1:211039‑M2/1‑147 (MQ=255) ctctGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGAcgc < 2:11782‑M2/150‑4 (MQ=255) ctctGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGAcgc > 1:82555‑M2/1‑147 (MQ=255) gggATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGAcgccagca < 2:265363‑M2/151‑9 (MQ=255) gggATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCg > 1:187860/1‑151 (MQ=255) gggATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCg > 2:88671/1‑151 (MQ=255) gATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGttctacgcgtcgggtcaaccgccagccca > 2:87798‑M1/1‑122 (MQ=255) gATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCgg < 1:107221/150‑1 (MQ=255) tAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAacga < 1:8210/151‑1 (MQ=255) gTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACggg > 1:17131/1‑149 (MQ=255) gAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGAc < 1:26751/150‑1 (MQ=255) aaCAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACt < 1:36899/150‑1 (MQ=255) gcTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGa > 1:115284/1‑150 (MQ=255) gtgGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAg > 2:96936/1‑151 (MQ=255) ttGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGTCATACGCGTCGGGTCAACcgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatag < 1:97454‑M2/151‑56 (MQ=255) gtggtgGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGTCATACGCGTCGGGTCAACcgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagat < 1:265365‑M2/151‑58 (MQ=255) gtggtgGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTg > 2:92236/1‑150 (MQ=255) cGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGgttgacccgacgcgtatgacgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagac < 2:284514‑M1/150‑83 (MQ=255) gTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGTCATACGCGTCGGGTCAACcgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacg < 2:284514‑M2/150‑69 (MQ=255) gTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCAc > 1:83362/1‑150 (MQ=255) gTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCAc > 1:55174/1‑150 (MQ=255) gTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCAc > 2:222407/1‑150 (MQ=255) cTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCAt > 1:215909/1‑151 (MQ=255) gTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCAttt > 2:305300/1‑151 (MQ=255) tatctatcTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAATAAAGTGCTGTTCGGTCACCAttt < 2:159548/150‑1 (MQ=255) atctatctGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGgttgacccgacgcgtatgacgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccac < 1:265365‑M1/151‑95 (MQ=255) ctatctGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGgttgacccgacgcgtatgacgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccacaa < 1:97454‑M1/151‑97 (MQ=255) gTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAgg > 2:183968/1‑151 (MQ=255) tttATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTc > 1:233121/1‑150 (MQ=255) gTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTgggg > 2:268908/1‑151 (MQ=255) tgggCTGGCGGTTGACCCGACGCGTAGAAcgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagcaatgtatc > 2:87798‑M2/1‑29 (MQ=255) tgCTGGCGtcatacgcgtcgggtcaaccgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagcaatgtatccc < 2:265363‑M1/151‑144 (MQ=255) gCGtcatacgcgtcgggtcaaccgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagcaatgtatcccagag > 1:211039‑M1/1‑3 (MQ=255) gCGtcatacgcgtcgggtcaaccgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagcaatgtatcccagag < 2:11782‑M1/150‑148 (MQ=255) gCGtcatacgcgtcgggtcaaccgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagcaatgtatcccagag > 1:82555‑M1/1‑3 (MQ=255) | CTGTAATGGGAGCATTTGCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATG > NC_000913/629934‑630226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |