| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 197975 = | 59 (1.270) | 5 (0.120) | 5/268 | 2.9 | 9.1% | coding (48/2433 nt) | bamA | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor |
| ? | NC_000913 | 197989 = | 47 (1.120) | coding (62/2433 nt) | bamA | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
CCGGTAGCAAACAGAGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCACCGTATACGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/198136‑197975‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgtatacggtgCTGAAGGGTTCGTAGTGAAAGATATTCATTTCGAAGGCCTTCAGCGTGTCGCCGTTGGTGCGGCCCTCCTCAGTATGCCGGTGCGCACAGGCGACACGGTTAATGATGAAGATATCAGTAATACCATTCGCGCTCTGTTTGCTACCGG > NC_000913/197989‑198136 CCGGTAGCAAACAGAGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCAC < 2:207929/151‑1 CAAACAGAGCGCGAATGGTATTACTGATATCTTCATAATTAACCGTGTCGCCTGTGCGCCCCGCCATACTGAGGAGGGCCGCCCCAACGACTACACGCTGAAGTCCTTCGAAATTAATATCTTTCCCTACGAACCCTTCAGCACCGTATAC < 1:255369/151‑1 AAACAGAGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCACCGTATACG < 1:222890/151‑1 AACAGAGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCACCGTATACGG > 2:76869/1‑151 AACAGAGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCACCGTATACGG < 1:257658/151‑1 ACAGAGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCACCGTATACGGT > 1:681669/1‑151 AGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCACCGTATACGGT < 1:389808/147‑1 AGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCACCGTATACGGT < 1:725960/147‑1 AGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCACCGTATACGGT < 1:658259/147‑1 TGGTATTACTGATATCGTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGAAGGGCCGCACCAACGGCGCCACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCACCGTATACGGTGCTGAAGGGTTC < 1:334982/151‑1 CGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCACCGTATACGGTGCTGAAGGGTTCGTAGTGAAAGATATTCATTTCGAAGGCCTTCAG < 1:611507/151‑1 CCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCACCGTATACGGTGCTGAAGGGTTCGTAGTGAAAGATATTCATTTCGAAGGCCTTCAGCG < 2:620111/151‑1 GCATACTGAGGAGGGCCGCACCAACGGCGACACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCACCGTATAC < 1:286706/88‑1 AACCCTTCAGCACCGTATACGGTGCTGAAGGGTTCGTAGTGAAAGATATTCATTTCGAAGGCCTTCAGCGTGTCGCCGTTGGTGCGGCCCTCCTCAGTATGCCGGTGCGCACAGGCGACACGGTTAATGATGAAGATATCAGTAATACCA < 1:620098/150‑1 CCCTTCAGCACCGTATACGGTGCTGAAGGGTTCGTAGTGAAAGATATTCATTTCGAAGGCCTTCAGCGTGTCGCCGTTGGTGCGGCCCTCCTCAGTATGCCGGTGCGCACAGGCGACACGGTTAATGATGAAGATATCAGTAATACCATT > 2:426117/1‑150 ACCGTATACGGTGCTGAAGGGTTCGTAGTGAAAGATATTCATTTCGAAGGCCTTCAGCGTGTCGCCGTTGGTGCGGCCCTCCTCAGTATGCCGGTGCGCACAGGCGACACGGTTAATGATGAAGATATCAGTAATACCATTCGCGCT > 2:488387/1‑147 GTATACGGTGCTGAAGGGTTCGTAGTGAAAGATATTCATTTCGAAGGCCTTCAGCGTGTCGCCGTTGGTGCGGCCCTCCTCAGTATGCCGGTGCGCACAGGCGACACGGTTAATGATGACGATATCAGTAATACCATTCGCGCTCTGTTTG > 1:619282/1‑151 GTATACGGTGCTGAAGGGTTCGTAGTGAAAGATATTCATTTCGAAGGCCTTCAGCGTGTCGCCGTTGGTGCGGCCCTCCTCAGTATGCCGGTGCGCACAGGCGACACGGTTAATGATGAAGATATCAGTAATACCATTCGCGCTCTGTTTG > 1:703382/1‑151 ACGGTGCTGAAGGGTTCGTAGTGAAAGATATTCATTTCGAAGGCCTTCAGCGTGTCGCCGTTGGTGCGGCCCTCCTCAGTATGCCGGTGCGCACAGGCGACACGGTTAATGATGAAGATATCAGTAATACCATTCGCGCTCTGTTTGCTAC < 2:616822/151‑1 GTGCTGAAGGGTTCGTAGTGAAAGATATTCATTTCGAAGGCCTTCAGCGTGTCGCCGTTGGTGCGGCCCTCCTCAGTATGCCGGTGCGCACAGGCGACACGGTTAATGATGAAGATATCAGTAATACCATTCGCGCTCTGTTTGCTACCGG > 1:637977/1‑151 GTGCTGAAGGGTTCGTAGTGAAAGATATTCATTTCGAAGGCCTTCAGCGTGTCGCCGTTGGTGCGGCCCTCCTCAGTATGCCGGTGCGCACAGGCGACACGGTTAATGATGAAGATATCAGTAATACCATTCGCGCTCTGTTTGCTACCGG > 1:71184/1‑151 CCGGTAGCAAACAGAGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGCTGAAGGCCTTCGAAATGAATATCTTTCACTACGAACCCTTCAGCACCGTATACGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/198136‑197975‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgtatacggtgCTGAAGGGTTCGTAGTGAAAGATATTCATTTCGAAGGCCTTCAGCGTGTCGCCGTTGGTGCGGCCCTCCTCAGTATGCCGGTGCGCACAGGCGACACGGTTAATGATGAAGATATCAGTAATACCATTCGCGCTCTGTTTGCTACCGG > NC_000913/197989‑198136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |