New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3060398 =	31 (0.670)	8 (0.180)	8/280	2.3	21.5%	coding (646/894 nt)	argP	transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor
	?	NC_000913	3060457 =	29 (0.660)					coding (705/894 nt)	argP	transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor

GTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGA  >  NC_000913/3060251‑3060544                                                                                                                                                    |                                                                                                                                                   tcagtgactttacgcatcatgcggctttcaggagcaaagcggtgccagtagagcatccgtcgttgaaatagcccaggcgttaagtcaatcagttcaccgctggccagctctttctcgatttgcaggtgcgggatcatacagcaggtgGTGc                                                                                                                                                 >  2:468252‑M1/148‑151 (MQ=255)      cTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTg                                                                                                                                             >  2:622640/1‑150 (MQ=255)                  tGCCGAAAAATATTTCCCTAACGGCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAAt                                                                                                                                <  1:544978/151‑1 (MQ=255)                      gAAAAATATTTCCCTAACGGCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAAttc                                                                                                                              >  2:471271/1‑149 (MQ=255)                      gAAAAATATTTCCCTAACGGCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAAttc                                                                                                                              <  1:471261/149‑1 (MQ=255)                            tatTTCCCTAACGGCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAg                                                                                                                      <  2:246128/151‑1 (MQ=255)                             atTTCCCTAACGGCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAg                                                                                                                      >  2:719824/1‑150 (MQ=255)                             atTTCCCTAACGGCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAg                                                                                                                      >  2:188377/1‑150 (MQ=255)                                gagcaaagcggtgccagtagagcatccgtcgttgaaatagcccaggcgttaagtcaatcagttcaccgctggccagctctttctcgatttgcaggtgcgggatcatacagcaggtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGtt                                                                                                                  <  2:684511‑M1/35‑1 (MQ=255)                                 cccTAACGGCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGtt                                                                                                                  >  2:78900/1‑150 (MQ=255)                                 cccTAACGGCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGtt                                                                                                                  >  1:450415/1‑150 (MQ=255)                                        ggCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACaa                                                                                                           >  1:295616/1‑150 (MQ=255)                                         gCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACaa                                                                                                           >  2:187764/1‑149 (MQ=255)                                              aCGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTc                                                                                                    <  2:85959/151‑1 (MQ=255)                                                          ttACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGcacca                                                                                        >  2:722007/1‑151 (MQ=255)                                                           tACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGcaccac                                                                                       <  1:146189/151‑1 (MQ=255)                                                                    cgcCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTAt                                                                              <  1:635597/151‑1 (MQ=255)                                                                    cgcCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTAt                                                                              <  1:397152/151‑1 (MQ=255)                                                                          tGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGAt                                                                           <  2:165016/148‑1 (MQ=255)                                                                                cgTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCAc                                                                    >  1:405531/1‑149 (MQ=255)                                                                                    gtcaatcagttcaccgctggccagctctttctcgatttgcaggtgcgggatcatacagcaggtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCaa                                                              <  1:94‑M1/87‑1 (MQ=255)                                                                                          tCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCgag                                                        >  1:725337/1‑151 (MQ=255)                                                                                            gttcaccgctggccagctctttctcgatttgcaggtgcgggatcatacagcaggtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGaa                                                      <  1:667108‑M1/95‑1 (MQ=255)                                                                                                 gATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAagag                                                  >  1:114294/1‑150 (MQ=255)                                                                                                  atatGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATACCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAagag                                                  >  2:255108/1‑149 (MQ=255)                                                                                                       cACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGcc                                            <  1:466887/150‑1 (MQ=255)                                                                                                       cACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCa                                           >  2:661764/1‑151 (MQ=255)                                                                                                           gctctttctcgatttgcaggtgcgggatcatacagcaggtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCgg                                       <  2:712486‑M1/110‑1 (MQ=255)                                                                                                                tttttGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATTTCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAAc                                  <  1:266649/151‑1 (MQ=255)                                                                                                                ttctcgatttgcaggtgcgggatcatacagcaggtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGaa                                   <  2:230962‑M1/114‑1 (MQ=255)                                                                                                                      cagcaAAACGTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGAtt                             <  1:693721/150‑1 (MQ=255)                                                                                                                                      tcatacagcaggtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTggg              <  1:693197‑M1/135‑1 (MQ=255)                                                                                                                                       gCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTTAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTa           >  2:389912/1‑151 (MQ=255)                                                                                                                                        ccTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTAt          >  2:338672/1‑151 (MQ=255)                                                                                                                                        ccTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTAt          >  2:427214/1‑151 (MQ=255)                                                                                                                                        ccTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTAt          >  1:122232/1‑151 (MQ=255)                                                                                                                                        ccTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCGCACCAGGGCACCACCTGCTGTATGACCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTAt          >  1:60366/1‑151 (MQ=255)                                                                                                                                          tCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTAttt        >  1:622263/1‑151 (MQ=255)                                                                                                                                               aggtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAacg   <  2:301329‑M1/146‑1 (MQ=255)                                                                                                                                                 gtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAacga  <  2:377838‑M1/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GTCAGCTCAAAACCCTTTGCCGAAAAATATTTCCCTAACGGCGTAACGCGTTCGGCATTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGA  >  NC_000913/3060251‑3060544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.