| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 515911 = | NA (NA) | 15 (0.060) | 10/146 | NT | NA | intergenic (+3979/‑2784) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 515928 = | NA (NA) | intergenic (+3996/‑2767) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
Only 100 of 258 total aligned reads displayed.
CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/516007‑515911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggacaatGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAA > USA300TCH1516_ALE/515928‑516015 CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCTACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG < 1:4151378/91‑1CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG < 2:743603/91‑1CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG < 2:1623183/91‑1CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG < 2:247086/91‑1CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG > 2:2670308/1‑91CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG < 1:991236/91‑1CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG > 2:3732887/1‑91CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG > 2:4959872/1‑91CTCACACAGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAG < 1:4645172/91‑1 TCACACCGGCATTCTCTCTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG < 2:3288722/91‑1 TCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG < 2:359494/91‑1 TCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG < 2:3983608/91‑1 TCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG > 1:2699837/1‑91 TCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG < 1:2690614/91‑1 TCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG < 1:2190319/91‑1 TCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG < 1:2561538/91‑1 TCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG > 1:1711219/1‑91 TCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG > 1:1835269/1‑91 TCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGG > 1:1900353/1‑91 CACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGA < 1:5180321/91‑1 CACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGA > 2:4077435/1‑91 CACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGA > 2:1821793/1‑91 CACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGA < 2:4520431/91‑1 CACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGA < 1:358073/91‑1 CACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGA > 1:5330626/1‑91 CACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGA < 1:2913573/91‑1 CACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGA > 1:2616720/1‑91 ACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTGGAACGCTCTCCTACCATTGTCCAAAGGAC > 2:2748732/1‑91 ACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCGTTGTCCAAAGGAC < 2:4051602/91‑1 ACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGAC < 2:4568656/91‑1 ACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGAC < 2:4063951/91‑1 ACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGAC > 1:405279/1‑91 CACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACA > 1:1091101/1‑91 CACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACA > 1:4406120/1‑91 CACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACA > 1:5110205/1‑91 CACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACA > 1:5705798/1‑91 CACCGGCATTCCCACTTCTAAGCCCCCCCCCTTTCCTTCCGATCATGCTTCAACGCCCTTAGAACGCTCTCCTCCCATTGTCCAAAGGACA > 2:2213818/1‑91 ACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAA < 2:781664/91‑1 CCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT < 1:3862213/91‑1 CCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT < 2:5578997/91‑1 CCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT > 2:5187256/1‑91 CCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT < 2:4222000/91‑1 CCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT > 2:2923318/1‑91 CCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT > 1:2716280/1‑91 CCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT < 1:3373962/91‑1 CCGGCAGTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT < 2:4989873/91‑1 TTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCTTTGGACAATGGTAGG < 1:3530550/91‑1 ATTGTCCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGG > 2:556036/1‑91 TTGTCCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGT > 1:2864991/1‑91 TGTCCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTG > 2:1112796/1‑91 TCCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTG > 1:3792662/1‑91 TCCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTG > 2:1336345/1‑91 CCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGA > 1:2425836/1‑91 CCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGA > 2:2983533/1‑91 CCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGA > 1:137406/1‑91 CCAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGG > 1:3357857/1‑86 CAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAG > 1:769731/1‑91 CAAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGCAGAAGCATGATCGTAAGGACATGTGGCGCGCTTAGAAGTGAGAATGCCGGTGTGAG > 2:1537062/1‑91 AAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGGGCTTAGAAGTGAGAATGCCGGGGTGAGg > 1:5291319/1‑90 AAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGT > 2:2298890/1‑91 AAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGT > 1:916409/1‑91 AAAGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGT > 1:657891/1‑91 AGGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAG > 1:5837318/1‑91 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC < 2:2001524/91‑1 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC < 1:1277717/91‑1 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC < 1:1346860/91‑1 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC > 2:2498224/1‑91 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC > 2:2636109/1‑91 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC < 1:4814295/91‑1 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC > 2:3373082/1‑91 GGACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGC > 2:3112657/1‑91 GACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCG < 1:4573391/91‑1 GACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCG > 1:3296259/1‑91 GACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCG < 1:1074569/91‑1 GACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCG < 2:1972642/91‑1 GACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCG < 2:2942242/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCTTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 2:5839521/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 2:1155881/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 2:576773/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 2:4384661/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 2:5521675/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 1:3197089/91‑1 ACAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGA < 1:2278075/91‑1 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA > 2:4788754/1‑91 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA > 2:862202/1‑91 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA > 1:1255650/1‑91 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA > 2:1473755/1‑91 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA > 1:1502859/1‑91 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA > 1:1632439/1‑91 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA > 2:2603373/1‑91 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA < 1:3979967/91‑1 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA > 1:4322752/1‑91 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA < 2:2134911/91‑1 CAATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAA > 1:4668615/1‑91 AATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAA < 2:5396049/91‑1 AATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAA < 1:3645258/91‑1 AATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAA < 2:638191/91‑1 AATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAA < 1:499926/91‑1 AATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAA < 1:581590/91‑1 AATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAA < 1:732937/91‑1 CTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/516007‑515911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggacaatGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAA > USA300TCH1516_ALE/515928‑516015 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |