| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 516021 | NA (NA) | 36 (0.130) | 11/148 | NT | NA | intergenic (+4089/‑2674) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 516028 | NA (NA) | intergenic (+4096/‑2667) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
Only 100 of 248 total aligned reads displayed.
ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/515926‑516021‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgggATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAAC < USA300TCH1516_ALE/516028‑515939 ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTTGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 1:1712258/1‑91ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 1:3924570/1‑91ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 2:1658571/1‑91ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 2:5860213/1‑91ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 1:5579926/1‑91ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG < 1:2672314/91‑1ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 1:1765869/1‑91ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG > 1:2669889/1‑91ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAG < 1:5782022/91‑1 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA < 2:2425397/91‑1 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > 2:4236716/1‑91 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > 1:5034625/1‑91 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > 2:1797221/1‑91 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA < 1:1998284/91‑1 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > 1:1820208/1‑91 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGA > 1:116486/1‑91 TGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTAAGTAGCGAAAGA > 2:3758492/1‑91 GGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGAC > 1:2098509/1‑91 GGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGAC > 1:3276024/1‑91 GTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACG < 2:5030222/91‑1 GTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACG < 2:332332/91‑1 GTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACG < 2:1171740/91‑1 GTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACG < 1:3914698/91‑1 GTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACG < 2:3640135/91‑1 GTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACG > 2:4567070/1‑91 GTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACG < 2:771834/91‑1 TAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGG < 2:2843073/91‑1 TAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGG > 2:1439430/1‑91 TAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGG < 1:5120640/91‑1 TAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGG < 1:3033519/91‑1 TAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGG < 1:127838/91‑1 TAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGG > 1:2568003/1‑91 AGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGATCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGG > 1:5697775/1‑91 AGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGG > 1:4834519/1‑91 AGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGG > 2:292087/1‑91 AGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGG > 2:2684797/1‑91 AGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGG > 1:2718782/1‑91 AGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTGAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGG < 2:5360979/91‑1 AGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATT > 1:4288366/1‑91 GAGCGTTCTAAGGGCGTTGAAGCATGAGCGTAAGGACATGTGGAGCGCTTAGCAGAGAGAATGCCGGTGTGGGTAGCGAAAGACGGGggag > 2:5298070/1‑87 GCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTC < 1:1201362/91‑1 GCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTC < 2:1701108/91‑1 CGTTCTAAGGGCGTTGAAGCATGGTCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCA < 1:1005696/91‑1 CGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCA < 2:4274148/91‑1 CGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCA < 1:4235409/91‑1 CGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCA < 2:4545057/91‑1 GTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCAC < 2:459999/91‑1 TTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCACC < 2:3472446/91‑1 TTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCACC < 2:2484427/91‑1 TTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCACC < 1:3650805/91‑1 TTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCACC < 2:4336860/91‑1 TTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCACC < 1:4934052/91‑1 TTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCACC < 2:2122031/91‑1 TTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCACC < 2:313444/91‑1 TTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCACC < 1:4352895/91‑1 CTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCACCCG < 1:2769131/91‑1 TAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGGATTCTCACCCGT < 1:3952382/91‑1 ttGACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCC > 2:923360/3‑91 GACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTT < 2:404841/91‑1 GACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTT < 1:4047122/91‑1 GACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTT < 2:2195502/91‑1 GACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTT < 2:4790438/91‑1 GACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCCCCACATGTCCTTACGATCATGCTTCAACGCCCTT > 1:1078984/1‑91 ACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTA > 2:2998083/1‑91 ACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTA > 2:3222008/1‑91 ACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTA > 2:4687502/1‑91 ACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTA > 1:78813/1‑91 ACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTA < 1:1180610/91‑1 ACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTA > 1:2225985/1‑91 ACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTA > 1:1220909/1‑91 ACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTA > 1:5611665/1‑91 ACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTA > 1:25065/1‑91 ACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTA < 1:530583/91‑1 ACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTA < 1:3418551/91‑1 ACGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTA < 2:159520/91‑1 tGGGATTTTCACCCGTCTTTCGCTACTCACATCGGCATTCTCACTTCTAAGCGCTCTACATGTCCTTACGATCATGCTTCAACGCCCTTAG < 2:5264054/90‑1 CGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAG < 1:4638756/91‑1 CGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAG < 2:5220248/91‑1 CGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAG < 2:4960584/91‑1 CGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAG < 1:2963916/91‑1 CGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAG > 1:3325505/1‑91 CGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAG > 1:2053211/1‑91 CGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAG > 1:4493697/1‑91 CGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAG > 2:4085469/1‑91 CGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAG < 1:1370585/91‑1 CGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAG < 2:3421859/91‑1 CGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAG < 2:1081337/91‑1 CGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAG < 2:3124180/91‑1 CGGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAG < 2:1379147/91‑1 GGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGA > 1:5485973/1‑91 GGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGA > 1:2396260/1‑91 GGGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGA < 2:4833678/91‑1 GGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAA < 2:4402126/91‑1 GGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAA < 2:570091/91‑1 GGATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAA < 2:393517/91‑1 GATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAAC > 1:3752259/1‑91 GATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAAC < 1:5136670/91‑1 GATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAAC < 2:1062430/91‑1 GATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAAC > 1:1022161/1‑91 GATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTCCAACGCCCTTAGAAC > 2:1232684/1‑91 ATGGTAGGAGAGCGTTCTAAGGGCGTTGAAGCATGATCGTAAGGACATGTGGAGCGCTTAGAAGTGAGAATGCCGGTGTGAGTAGCGAAAGACGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/515926‑516021‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgggATTCTCACCCGTCTTTCGCTACTCACACCGGCATTCTCACTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAAC < USA300TCH1516_ALE/516028‑515939 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |