| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 516506 = | NA (NA) | 3 (0.010) | 3/150 | NT | NA | intergenic (+4574/‑2189) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 516536 = | NA (NA) | intergenic (+4604/‑2159) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
Only 100 of 148 total aligned reads displayed.
AAGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/516600‑516506‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaacCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC > USA300TCH1516_ALE/516536‑516625 AAGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGAT < 2:5508662/91‑1AAGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGAT > 2:5406545/1‑91AAGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGAT < 2:5057700/91‑1AAGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGAT > 2:3609451/1‑91AAGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGAT > 2:2930415/1‑91 AGCTAACCACTCCTCTTAGCCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATA < 1:3437565/91‑1 AGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATA > 2:1055980/1‑91 AGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATA > 2:90027/1‑91 AGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATA > 2:41373/1‑91 AGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATA > 2:3545805/1‑91 AGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATA < 2:2320007/91‑1 AGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATA < 2:1657150/91‑1 AGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATA > 2:1358022/1‑91 AGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATA > 1:790692/1‑91 AGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATA > 1:5095752/1‑91 AGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATA > 1:1175277/1‑91 AGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATA > 1:1544328/1‑91 AGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATA > 1:1618699/1‑91 GCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCCCCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAA > 2:2375303/1‑91 GCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGCGACCTGTGTTTTTGATAA > 2:2954543/1‑91 GCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAA > 1:2776039/1‑91 GCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAA > 1:1044559/1‑91 GCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAA > 2:4001386/1‑91 GCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAA > 2:2421672/1‑91 GCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAA > 2:197087/1‑91 GCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAA > 1:1044280/1‑91 GCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAA > 1:66756/1‑91 GCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAA > 1:2683426/1‑91 CTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAA > 2:2008855/1‑91 CTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAA > 2:1434871/1‑91 CTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAA < 2:2801744/91‑1 CTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAA > 1:1848011/1‑91 CTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAA < 2:3739556/91‑1 CTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAA < 1:4607604/91‑1 TAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCCCCTTACGGTTTAGCAGAGACCTGTGTTTTTGATCAAC > 2:3678937/1‑91 TAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAAC < 1:2922544/91‑1 TAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAAC < 1:4264945/91‑1 TAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAAC < 1:2085698/91‑1 TAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAAC < 2:2682838/91‑1 TAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAAC < 2:1620629/91‑1 TAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAAC > 1:3475464/1‑91 TAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAAC > 2:3330181/1‑91 TAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAAC > 2:4409831/1‑91 TAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAAC > 1:2860241/1‑91 TAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGCGTTTTTGATAAAC > 1:448751/1‑91 CCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAA > 1:885060/1‑91 GAGACCTGTGTTTTTGATAAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGT > 1:5427741/1‑68 GAGACCTGTGTTTTTGATAAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGT < 2:5427741/68‑1 TAAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCGGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAG < 2:4679320/91‑1 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC < 2:2193115/91‑1 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 2:3132353/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC < 1:3212625/91‑1 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 2:2020249/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 2:2274554/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 1:3012270/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 2:893315/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 1:2965028/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC < 2:3321878/91‑1 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC < 2:608697/91‑1 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 2:5759773/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC < 2:5777006/91‑1 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 2:1884660/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 1:4227641/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 1:4767505/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 1:5041191/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 1:5081548/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 1:5497486/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 1:5660883/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 1:5756338/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 1:5801189/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 1:2522501/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 1:690934/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 1:3346887/1‑91 AAACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGC > 2:152676/1‑91 AACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCC < 1:331789/91‑1 AACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCC > 1:5849802/1‑91 AACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCC > 1:1943992/1‑91 AACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCC > 1:2916980/1‑91 AACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCC < 1:1312745/91‑1 AACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCC > 1:1976028/1‑91 AACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCC > 1:5230414/1‑91 AACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCC < 1:1350246/91‑1 AACCGTAAGGGGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCC < 2:3078274/91‑1 ACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCC < 2:3812208/91‑1 ACCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCC < 2:4706716/91‑1 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC > 2:5492147/1‑91 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC < 2:4850962/91‑1 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC < 1:1973299/91‑1 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC > 2:1818036/1‑91 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC < 1:4567190/91‑1 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC > 2:818313/1‑91 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC < 1:4339426/91‑1 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC > 1:2455948/1‑91 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC < 2:5314042/91‑1 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC > 2:5151168/1‑91 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC < 1:524027/91‑1 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC < 2:4258931/91‑1 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC < 1:2907831/91‑1 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC > 2:1185795/1‑91 CCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC < 1:2195958/91‑1 AAGCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTTTAGCAGAGACCTGTGTTTTTGATAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/516600‑516506‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaacCGTAAGGTGATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTAGCTTCTGCGAAGCTACGAATCGAAGCCCC > USA300TCH1516_ALE/516536‑516625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |