New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 558929 | NA (NA) | 3 (0.010) | 3/144 | NT | NA | intergenic (+142/+3660) | USA300TCH1516_00505/gabR | tRNA‑Ile/HTH‑type transcriptional regulatory protein GabR |
? | USA300TCH1516_ALE | = 558960 | NA (NA) | intergenic (+173/+3629) | USA300TCH1516_00505/gabR | tRNA‑Ile/HTH‑type transcriptional regulatory protein GabR |
TAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGG > USA300TCH1516_ALE/558864‑558981 | ccatcctacaggaaacgcgttattaatcttgtgAGTGTTCTTTCGAACACTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACATa > 2:650176‑M2/34‑91 (MQ=255) cgttattaatcttgtgAGTGTTCTTTCGAACACTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACATAGATTAAGTTATTAAggg > 1:5316853‑M2/17‑91 (MQ=255) aatcttgtgAGTGTTCTTTCGAACACTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACATAGATTAAGTTATTAAGGGCGCACgg > 2:3352262‑M2/10‑91 (MQ=255) aatcttgtgAGTGTTCTTTCGAACACTCACAAGATTAAGAACGCGTTTCCTGTAGGATGGAAACATAGATTAAGTTATTAAGGGCGCACgg > 2:3464020‑M2/10‑91 (MQ=255) atcttgtgAGTGTTCTTTCGAACACTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACATCGATTAAGTTATTAAGGGCGCACGGt > 1:5157446‑M2/9‑91 (MQ=255) cttgtgAGTGTTCTTTCGAACACTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACATAGATTAAGTTATTAAGGGCGCACGGTgg > 1:5305527‑M2/7‑91 (MQ=255) | TAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGG > USA300TCH1516_ALE/558864‑558981 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |