BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2492476	241 (0.810)	20 (0.080)	14/138	NT	8.1%	intergenic (+19/+27)	yhfP/rimI_4	Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase
*	?	USA300TCH1516_ALE	= 2492487	246 (0.960)	20 (0.080)	14/138	NT	8.1%	intergenic (+30/+16)	yhfP/rimI_4	Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase

Only 100 of 363 total aligned reads displayed.

CAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGC  >  USA300TCH1516_ALE/2492397‑2492577

cAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCga                                                                                            <  2:1017987/91‑1 (MQ=255)

  aaGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAga                                                                                          >  1:4398263‑M2/1‑89 (MQ=255)

    gTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAgatg                                                                                        <  2:1247065‑M2/91‑5 (MQ=255)

      aaTTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAgatgtc                                                                                      >  2:4585874‑M2/1‑85 (MQ=255)

       aTTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAgatgtct                                                                                     <  2:1784260‑M2/91‑8 (MQ=255)

       aTTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAgatgtct                                                                                     >  1:3107745‑M2/1‑84 (MQ=255)

        ttAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAgatgtctt                                                                                    <  2:865427‑M2/91‑9 (MQ=255)

         tAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAgatgtcttt                                                                                   >  1:2299782‑M2/1‑82 (MQ=255)

           aaCATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAgatgtcttttt                                                                                 <  2:790019‑M2/91‑12 (MQ=255)

           aaCATGAAAATAAAGGGCGCATTGGGATCGAGTTCCGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAgatgacttttt                                                                                 >  2:4018333‑M2/1‑80 (MQ=255)

             cATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTa                                                                               >  2:2850479/1‑91 (MQ=255)

              aTGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTaa                                                                              >  2:1212472/1‑91 (MQ=255)

              aTGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTaa                                                                              >  2:4863898/1‑91 (MQ=255)

               tGAAAATAAAGGGCGCATCGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAt                                                                             <  1:5752086/91‑1 (MQ=255)

                 aaaaTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAttt                                                                           >  2:5306237/1‑91 (MQ=255)

                 aaaaTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAttt                                                                           <  1:517895/91‑1 (MQ=255)

                 aaaaTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAttt                                                                           <  2:3664609/91‑1 (MQ=255)

                    aTAAAGGGCGCATTGTTATCGATTTCGGTGTAAATAAATAGTATTCATGAACAATACATCTCGTTATGCGAgatgtctttttcatgaatac                                                                        <  2:4158152‑M2/91‑21 (MQ=255)

                     tAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTa                                                                       <  2:294127/91‑1 (MQ=255)

                       aaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTAtt                                                                     >  1:60634/1‑91 (MQ=255)

                       aaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTAtt                                                                     >  2:289389/1‑91 (MQ=255)

                       aaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTAtt                                                                     >  1:4143065/1‑91 (MQ=255)

                         gggCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTg                                                                   >  2:1471529/1‑91 (MQ=255)

                         gggCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTg                                                                   >  1:4299299/1‑91 (MQ=255)

                            cgcATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGTCATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGata                                                                <  1:4561247/91‑1 (MQ=255)

                            cgcATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAgatgtctttttcatgaatactatttatc                                                                <  1:1592405‑M2/91‑29 (MQ=255)

                            cgcATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGata                                                                >  2:580707/1‑91 (MQ=255)

                             gcATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGatat                                                               <  1:3566809/91‑1 (MQ=255)

                              cATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGAtata                                                              <  2:4643117/91‑1 (MQ=255)

                              cATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGAtata                                                              >  1:303241/1‑91 (MQ=255)

                               aTTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATatac                                                             <  2:5573642/91‑1 (MQ=255)

                                  gTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATatacata                                                          <  1:5134204/91‑1 (MQ=255)

                                     aTCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAgatgtctttttcatgaatactatttatctacaccgaa                                                       >  2:1592405‑M2/1‑54 (MQ=255)

                                     aTCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCg                                                       <  1:2033131/91‑1 (MQ=255)

                                     aTCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCg                                                       >  2:1963206/1‑91 (MQ=255)

                                      tCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGc                                                      >  2:3152578/1‑91 (MQ=255)

                                      tCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGc                                                      >  1:1195255/1‑91 (MQ=255)

                                      tCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGc                                                      <  1:5243330/91‑1 (MQ=255)

                                      tCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGc                                                      <  1:1009075/91‑1 (MQ=255)

                                         aTTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTg                                                   <  2:2459636/91‑1 (MQ=255)

                                         aTTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTg                                                   <  2:2083731/91‑1 (MQ=255)

                                         aTTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTg                                                   <  1:3652093/91‑1 (MQ=255)

                                          tttCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGa                                                  >  1:5284459/1‑91 (MQ=255)

                                            tCGGTGTAGATCTATAGTGTTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAAt                                                >  2:5462473/1‑91 (MQ=255)

                                            tCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAAt                                                >  2:2693001/1‑91 (MQ=255)

                                            tCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAAt                                                <  1:1353579/91‑1 (MQ=255)

                                            tCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAAt                                                >  1:4110485/1‑91 (MQ=255)

                                              ggTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCt                                              <  2:4360995/91‑1 (MQ=255)

                                              ggTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCt                                              <  2:4488700/91‑1 (MQ=255)

                                               gtgtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTg                                             <  2:500937/91‑1 (MQ=255)

                                                 gtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGt                                           >  2:3508294/1‑91 (MQ=255)

                                                 gtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGt                                           <  2:155606/91‑1 (MQ=255)

                                                 gtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGt                                           <  2:2001602/91‑1 (MQ=255)

                                                  tAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGtt                                          >  1:1263881/1‑91 (MQ=255)

                                                  tAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGtt                                          <  2:334083/91‑1 (MQ=255)

                                                  tAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGtt                                          >  1:1409924/1‑91 (MQ=255)

                                                   aGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTc                                         <  2:1772215/91‑1 (MQ=255)

                                                     aTAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCgg                                       <  2:3121078/91‑1 (MQ=255)

                                                       aaaTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCggta                                     <  1:315473/91‑1 (MQ=255)

                                                       aaaTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCggta                                     >  1:1466378/1‑91 (MQ=255)

                                                        aaTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCggtag                                    <  2:4199483/91‑1 (MQ=255)

                                                        aaTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTAggtag                                    >  2:5227235/1‑91 (MQ=255)

                                                          tAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCggtaggt                                  <  1:2999092/91‑1 (MQ=255)

                                                             tATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGtata                               <  2:3233257/91‑1 (MQ=255)

                                                              aTTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATaa                              >  1:907074/1‑91 (MQ=255)

                                                               ttCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATaaa                             >  2:2399627/1‑91 (MQ=255)

                                                                tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt                            <  1:5579047/91‑1 (MQ=255)

                                                                tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt                            >  2:3594520/1‑91 (MQ=255)

                                                                 cATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                           <  1:2192339/91‑1 (MQ=255)

                                                                 cATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                           <  1:54510/91‑1 (MQ=255)

                                                                 cATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                           <  1:1811090/91‑1 (MQ=255)

                                                                  aTGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATcc                          <  1:2759865/91‑1 (MQ=255)

                                                                  aTGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATcc                          <  2:2291011/91‑1 (MQ=255)

                                                                   tGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCa                         <  2:626537/91‑1 (MQ=255)

                                                                   tGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCa                         <  2:4711611/91‑1 (MQ=255)

                                                                      aaaaGACATCCCGTTATGCGAgatgtctttttcatgaatactatttatctacaccgaaatcgataacaatgcgccctttattttcatgttt                      <  1:786991‑M2/91‑71 (MQ=255)

                                                                       aaaGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAtt                     <  2:3051124/91‑1 (MQ=255)

                                                                        aaGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAttt                    >  1:822091/1‑91 (MQ=255)

                                                                         aGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAtttt                   <  1:705240/91‑1 (MQ=255)

                                                                           aCATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGt                 >  1:1876073/1‑91 (MQ=255)

                                                                           aCATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGt                 >  1:4719055/1‑91 (MQ=255)

                                                                            cATCCCGTTATGCGAgatgtctttttcatgaatactatttatctacaccgaaatcgataacaatgcgccctttattttcatgtttaattac                <  2:2602602‑M2/91‑77 (MQ=255)

                                                                            cATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGta                >  1:2645611/1‑91 (MQ=255)

                                                                            cATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGta                <  2:5171416/91‑1 (MQ=255)

                                                                             aTCCCGTTATTCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtat               <  2:4320614/91‑1 (MQ=255)

                                                                             aTCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtat               >  1:1970566/1‑91 (MQ=255)

                                                                             aTCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtat               >  1:5015537/1‑91 (MQ=255)

                                                                              tCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtata              >  1:3139608/1‑91 (MQ=255)

                                                                              tCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtata              >  1:2491457/1‑91 (MQ=255)

                                                                               cccGTTATGCGAgatgtctttttcatgaatactatttatctacaccgaaatcgataacaatgcgccctttattttcatgtttaattacttt             <  1:3444213‑M2/91‑80 (MQ=255)

                                                                                ccGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtatata            >  1:389701/1‑91 (MQ=255)

                                                                                 cGTTATGCGAgatgtctttttcatgaatactatttatctacaccgaaatcgataacaatgcgccctttattttcatgtttaattactttgt           <  2:693091‑M2/91‑82 (MQ=255)

                                                                                   ttATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAtt         <  1:4766463/91‑1 (MQ=255)

                                                                                    tATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAttt        <  2:1355029/91‑1 (MQ=255)

                                                                                     aTGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTa       <  1:2399627/91‑1 (MQ=255)

                                                                                       gCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATc     >  2:4435934/1‑91 (MQ=255)

                                                                                       gCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATc     >  1:1104046/1‑91 (MQ=255)

                                                                                       gCGAGATGTCTTTTTTAATTTAGTATTTGATATAAATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTATGTATATAATTTAta     >  2:384623/1‑90 (MQ=255)

                                                                                         gagaTGTCTTTTTTTTTTTTTTTTTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATACTTTATccc   >  2:2506140/1‑90 (MQ=255)

                                                                                         gagaTGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCg   <  2:2745891/91‑1 (MQ=255)

CAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGC  >  USA300TCH1516_ALE/2492397‑2492577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.