| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 308,084 | C→T | 5.8% | A111V (GCA→GTA) | lytR_1 → | Sensory transduction protein LytR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 308,084 | 0 | C | T | 5.8% | 1057.5 / 36.2 | 307 | A111V (GCA→GTA) | lytR_1 | Sensory transduction protein LytR |
| Reads supporting (aligned to +/- strand): ref base C (153/136); new base T (8/10); total (161/146) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 310 total aligned reads displayed.
CTGCACATGACCAATACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGATCAAAGCTT > USA300TCH1516_ALE/307994‑308174 | tGCACATGACCAATACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCa < 1:4290316/91‑1 (MQ=255) cacaTGACCAATACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAagtagt < 1:3248286/91‑1 (MQ=255) caTGACCAATACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCa < 1:2339382/91‑1 (MQ=255) tGACCAATACGCAGTACAGGCATTTGAATTAAATGCGACAGAGTATATTTTGAAACCGTTTGGTCAAAAACGTTTTGAACAAGCAGTCAAt < 1:5688428/91‑1 (MQ=255) tGACCAATACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAAt > 1:3513555/1‑91 (MQ=255) aCCAATACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATaa < 1:1693242/91‑1 (MQ=255) cAATACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGTAGTCAATAAAg > 1:933882/1‑91 (MQ=255) cAATACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAg < 1:67772/91‑1 (MQ=255) cAATACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAg < 1:5625200/91‑1 (MQ=255) cAATACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAg < 2:1737638/91‑1 (MQ=255) cAATACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAg < 1:1675461/91‑1 (MQ=255) cAATACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAg > 2:3541284/1‑91 (MQ=255) cAATACGCAGTACAGGCATATGAATTAAATGCGACAGACTATATTTTGAAAAAAAATAAAAAAAAACGTATTGAACAAGCAGTCAATAAAg < 2:3845703/91‑1 (MQ=255) aaTACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAgt > 1:1446238/1‑91 (MQ=255) aaTACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAgt > 1:3390063/1‑91 (MQ=255) aCGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGATACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAgtgcg < 2:5669699/91‑1 (MQ=255) aCGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAgtgcg > 2:5867135/1‑91 (MQ=255) cGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAgtgcgt > 2:1426847/1‑91 (MQ=255) cGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAgtgcgt < 1:46568/91‑1 (MQ=255) gCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAgtgcgtg > 1:259716/1‑91 (MQ=255) gCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAgtgcgtg > 1:1367963/1‑91 (MQ=255) gCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAgtgcgtg > 2:4001307/1‑91 (MQ=255) cAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGTAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAgtgcgtgc > 2:3960133/1‑91 (MQ=255) cAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAgtgcgtgc < 1:2189999/91‑1 (MQ=255) gTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGa > 1:5416326/1‑91 (MQ=255) aCAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACt < 1:889180/91‑1 (MQ=255) cAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTa < 2:2100103/91‑1 (MQ=255) ggCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGTAGTCAATAAAGTGCGTGCGACTaaa > 2:4558562/1‑91 (MQ=255) gCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAg > 1:3305822/1‑91 (MQ=255) gCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAg < 2:4875695/91‑1 (MQ=255) cATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGc < 2:3674040/91‑1 (MQ=255) cATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGc < 1:1307078/91‑1 (MQ=255) aTTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGcc < 1:3861321/91‑1 (MQ=255) aTTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGcc < 2:1533271/91‑1 (MQ=255) tttGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCa < 1:2223015/91‑1 (MQ=255) aaTTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAga < 2:2138294/91‑1 (MQ=255) aTTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAgat < 2:4381240/91‑1 (MQ=255) ttAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAgatg > 2:1660171/1‑91 (MQ=255) ttAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAgatg < 1:783072/91‑1 (MQ=255) tAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAgatga < 2:5631407/91‑1 (MQ=255) aaTGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGata < 2:1610902/91‑1 (MQ=255) aTGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGataa < 1:18803/91‑1 (MQ=255) tGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGataat > 2:671325/1‑91 (MQ=255) gCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGataata > 1:5192185/1‑91 (MQ=255) gACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAAc > 1:4738028/1‑91 (MQ=255) aCAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAGTAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACg > 1:4851580/1‑91 (MQ=255) aCAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGTGTGCGACTAAAGCCAAAGATGATAATAACg < 2:4301080/91‑1 (MQ=255) aCAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACg > 2:2248627/1‑91 (MQ=255) aCTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAATGATGATAATAACGCAAg < 1:4439307/91‑1 (MQ=255) aCTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAg < 1:4956384/91‑1 (MQ=255) aCTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAg < 2:5745350/91‑1 (MQ=255) aCTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAg < 1:4067081/91‑1 (MQ=255) atatTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGc < 1:4359018/91‑1 (MQ=255) tatTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCa > 1:4473845/1‑91 (MQ=255) atTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCaa > 1:1248106/1‑91 (MQ=255) tttGAAACCGTTTGGTCAAAAACGTATTGAATAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAAtt < 1:5454412/91‑1 (MQ=255) tttGAAACCGTTTGGTCAAAAACGTATTGAACAAGTAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAAtt < 2:3093861/91‑1 (MQ=255) tttGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAAtt > 1:3096980/1‑91 (MQ=255) tttGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAAtt < 2:1152817/91‑1 (MQ=255) tttGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAAtt < 1:700172/91‑1 (MQ=255) tttGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAAtt > 2:1804142/1‑91 (MQ=255) ttGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTg > 2:1085811/1‑91 (MQ=255) tGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGc > 2:2522472/1‑91 (MQ=255) tGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGc > 2:5381179/1‑91 (MQ=255) gAAACCGTTTGGTCAAAAACGTATTGAACAAGTAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCg > 1:4822395/1‑91 (MQ=255) aaaCCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAGTAACGCAAGTGCAATTGCGa > 1:2932247/1‑91 (MQ=255) aaaCCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGa > 2:1234029/1‑91 (MQ=255) aaaCCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGa < 1:2372870/91‑1 (MQ=255) aaaCCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGa > 1:1573198/1‑91 (MQ=255) aaCCGTTTGGTCAAAAACGTATTGAACAAGTAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGaa > 2:4792525/1‑91 (MQ=255) aCCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAAt > 2:301513/1‑91 (MQ=255) gTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCGATTGCGAATGat > 2:3749162/1‑91 (MQ=255) gTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGat > 1:5796611/1‑91 (MQ=255) tttGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGata > 1:2837872/1‑91 (MQ=255) gTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTc > 2:1901739/1‑91 (MQ=255) tCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGTATGATATGTCg < 2:5822483/91‑1 (MQ=255) cAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCgg < 1:2248627/91‑1 (MQ=255) aaaaCGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCg > 1:3921919/1‑91 (MQ=255) aaaCGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGa > 2:50125/1‑91 (MQ=255) aaaCGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGa > 1:193766/1‑91 (MQ=255) aaaCGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGa > 2:904110/1‑91 (MQ=255) gTATTGAACAAGTAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAAttt > 1:5299417/1‑91 (MQ=255) gTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAAttt < 1:4143672/91‑1 (MQ=255) tATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAAtttt > 2:3610932/1‑91 (MQ=255) ttGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGa > 1:369170/1‑91 (MQ=255) ttGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGa > 2:2746275/1‑91 (MQ=255) ttGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGa < 1:5381179/91‑1 (MQ=255) tGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGAt < 2:1107994/91‑1 (MQ=255) gAACAAGTAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGATc > 2:3336010/1‑91 (MQ=255) gAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGATc < 1:2747792/91‑1 (MQ=255) gAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGATc < 1:5098602/91‑1 (MQ=255) aCAAGCAGTCGATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGATCaa < 2:4671506/91‑1 (MQ=255) aCAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGATCaa < 1:421058/91‑1 (MQ=255) aaGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGATCAAAg < 1:1097262/91‑1 (MQ=255) aGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGATCAAAGc < 2:4479752/91‑1 (MQ=255) gCAGTCAATAAAGTGCGTGCGAGTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCCGCGAATTTTGATCAAAGCt > 1:4507074/1‑91 (MQ=255) gCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGATCAAAGCt > 2:3663101/1‑91 (MQ=255) gCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGATCAAAGCt > 2:3259538/1‑91 (MQ=255) gCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGATCAAAGCt > 2:2975011/1‑91 (MQ=255) cAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGATCAAAGCtt < 1:3731519/91‑1 (MQ=255) | CTGCACATGACCAATACGCAGTACAGGCATTTGAATTAAATGCGACAGACTATATTTTGAAACCGTTTGGTCAAAAACGTATTGAACAAGCAGTCAATAAAGTGCGTGCGACTAAAGCCAAAGATGATAATAACGCAAGTGCAATTGCGAATGATATGTCGGCGAATTTTGATCAAAGCTT > USA300TCH1516_ALE/307994‑308174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |