New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 21026 =NA (NA)81 (0.090) 24/168 22.7 21.6% coding (45/675 nt) USA300HOU_pUSA300HOUMR0027 IS431mec transposase
?USA300TCH1516_ALE 36492 = 316 (0.840)coding (60/675 nt) USA300HOU_RS00140 hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 316 total aligned reads displayed.

AACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTG  >  USA300TCH1516_ALE/36404‑36569
                                                                                        |                                                                             
accGGTAGACCGTTGAATGATGAACATTTACACCGCGTTCCCTTAACATTTCAGAAATATCACGATAACTAAATGTATATCTTAGAtacta                                                                             >  2:5515293/3‑91 (MQ=11)
 aCGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGAtagtag                                                                            >  1:1664240/1‑91 (MQ=34)
 aCGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGAtagtag                                                                            >  1:3103465/1‑91 (MQ=34)
     tctaCCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCaa                                                                        >  2:3085682/4‑91 (MQ=21)
     tAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCaa                                                                        <  2:887874/91‑1 (MQ=34)
      aGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGccgtt                                                                       <  1:2466123/91‑4 (MQ=21)
       gACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACg                                                                      <  1:3786709/91‑1 (MQ=34)
       gACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACg                                                                      >  1:2691105/1‑91 (MQ=33)
        aCCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACgg                                                                     <  2:5333884/91‑1 (MQ=34)
         ccGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGc                                                                    <  1:5103170/91‑1 (MQ=34)
         ccGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGc                                                                    >  1:3687543/1‑91 (MQ=34)
         ccGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGc                                                                    <  1:328812/91‑1 (MQ=34)
         ccGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGc                                                                    >  1:4071763/1‑91 (MQ=34)
         ccGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGc                                                                    >  2:67743/1‑91 (MQ=33)
         ccGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGc                                                                    >  1:4772365/1‑91 (MQ=34)
          cGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCt                                                                   >  2:5945717/1‑91 (MQ=34)
            ttGAATGATGAACGTTTACACCACGTTCCCTTAATATTGCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTAc                                                                 <  1:5445375/91‑1 (MQ=18)
            ttGAATGATGAACGTCTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAGTGTATATCTTAGATAGTAGCCAACGGCTAc                                                                 <  2:3759330/91‑1 (MQ=16)
              gAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAg                                                               <  1:1200906/91‑1 (MQ=33)
                atgatgAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTg                                                             >  1:3127855/1‑91 (MQ=34)
                 tgatgaACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGa                                                            >  1:1548957/1‑91 (MQ=34)
                  gatgaACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGAt                                                           <  1:628067/91‑1 (MQ=34)
                   atgaACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATa                                                          >  1:2566684/1‑91 (MQ=34)
                   atgaACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATa                                                          >  1:529086/1‑91 (MQ=34)
                    tgaACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATaa                                                         >  2:5619980/1‑91 (MQ=34)
                    tgaACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATaa                                                         >  2:2019495/1‑91 (MQ=34)
                     gaACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAAc                                                        >  2:505878/1‑91 (MQ=34)
                       aCGTTTACACCACGTTCCCTTAATATTTCAGATCTATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACTGTGATAACAt                                                      >  1:6561708/1‑91 (MQ=255)
                       aCGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACAt                                                      >  2:1072253/1‑91 (MQ=34)
                       aCGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACAt                                                      <  1:1954110/91‑1 (MQ=34)
                        cGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATc                                                     >  1:6174833/1‑91 (MQ=34)
                             acacCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGt                                                <  1:917112/91‑1 (MQ=34)
                             acacCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGt                                                <  2:1433615/91‑1 (MQ=34)
                             acacCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGt                                                <  1:5198288/91‑1 (MQ=34)
                              caccacGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGtt                                               >  1:5229676/1‑91 (MQ=34)
                              caccacGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGtt                                               >  1:1115100/1‑91 (MQ=34)
                                ccacGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTaa                                             >  2:4634725/1‑91 (MQ=34)
                                ccacGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTaa                                             <  2:6475126/91‑1 (MQ=34)
                                ccacGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTaa                                             <  1:2845478/91‑1 (MQ=34)
                                   cGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAAtt                                          >  1:397244/1‑91 (MQ=34)
                                   cGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAAtt                                          >  2:3648390/1‑91 (MQ=34)
                                   cGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAAtt                                          >  2:4128649/1‑91 (MQ=34)
                                    gTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTg                                         <  1:3001112/91‑1 (MQ=34)
                                     ttCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGtt                                               <  2:4734554/84‑1 (MQ=35)
                                      tCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGtt                                       <  1:5894239/91‑1 (MQ=33)
                                      tCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGtt                                       <  1:291431/91‑1 (MQ=34)
                                       cccTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGttt                                      >  1:1059428/1‑91 (MQ=34)
                                       cccTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGttt                                      >  2:4910375/1‑91 (MQ=34)
                                        ccTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTta                                     >  2:218072/1‑91 (MQ=33)
                                        ccTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTta                                     <  2:2978289/91‑1 (MQ=34)
                                        ccTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTta                                     <  1:20853/91‑1 (MQ=34)
                                          ttAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTtata                                   >  1:3927378/1‑91 (MQ=34)
                                          ttAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTtata                                   >  2:5970701/1‑91 (MQ=34)
                                           tAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTatat                                  >  1:1855268/1‑91 (MQ=34)
                                             atatTTCAGATATATCTCGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATATCATCCTTGTTAAATTGTTTATATCt                                <  2:6264663/91‑1 (MQ=255)
                                             atatTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCt                                <  2:2858207/91‑1 (MQ=33)
                                             atatTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCt                                >  2:2114783/1‑91 (MQ=34)
                                              tatTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTg                               >  2:4451635/1‑91 (MQ=34)
                                               atTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGa                              <  2:186061/91‑1 (MQ=34)
                                                tttCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGaa                             <  2:5281793/91‑1 (MQ=34)
                                                 ttCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGaaa                            >  2:43536/1‑91 (MQ=33)
                                                 ttCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGaaa                            <  1:348344/91‑1 (MQ=34)
                                                  tCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTACATTGTTTATATCTGactt                           >  1:5510486/1‑88 (MQ=255)
                                                  tCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAAt                           >  2:921003/1‑91 (MQ=34)
                                                  tCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAAt                           <  1:3532071/91‑1 (MQ=34)
                                                   cAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATa                          >  1:5787246/1‑91 (MQ=34)
                                                     gATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGt                        >  1:4538993/1‑91 (MQ=34)
                                                     gATATATCACGATAACGCAATGTATATCTAAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTCATATCTGAAATAGt                        >  1:6059132/1‑91 (MQ=255)
                                                      atatatCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGtt                       <  2:2279023/91‑1 (MQ=34)
                                                      atatatCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGtt                       <  2:3460769/91‑1 (MQ=33)
                                                        atatCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCa                     <  2:1813873/91‑1 (MQ=34)
                                                        atatCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCa                     <  1:3652913/91‑1 (MQ=34)
                                                        atatCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCa                     <  1:5595417/91‑1 (MQ=34)
                                                         tatCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCAt                    >  1:2299707/1‑91 (MQ=34)
                                                         tatCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCAt                    >  2:33396/1‑91 (MQ=34)
                                                         tatCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCAt                    >  2:2512508/1‑91 (MQ=34)
                                                          atCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATa                   >  1:2175237/1‑91 (MQ=34)
                                                           tCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATAc                  <  2:5146474/91‑1 (MQ=34)
                                                               gATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACagaa              <  1:849022/91‑1 (MQ=34)
                                                                aTAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACagaag             <  1:4337119/91‑1 (MQ=34)
                                                                aTAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACagaag             <  1:4906395/91‑1 (MQ=34)
                                                                 tatcTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAGCATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACagaagg            <  2:6430600/88‑2 (MQ=255)
                                                                 tAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTGAATTGTTTATATCTGAAATAGTTCATACagaaga            <  2:3900248/91‑1 (MQ=21)
                                                                 tAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACagaaga            <  2:2422067/91‑1 (MQ=34)
                                                                 tAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACagaaga            >  2:4850547/1‑91 (MQ=34)
                                                                 tAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACagaaga            <  2:3690956/91‑1 (MQ=34)
                                                                 tAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACagaaga            <  2:121165/91‑1 (MQ=34)
                                                                  aaCTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGAc           <  1:5636158/91‑1 (MQ=33)
                                                                  aaCTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGAc           <  2:3143902/91‑1 (MQ=34)
                                                                  aaCTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGAc           >  2:1329192/1‑91 (MQ=34)
                                                                  aaCTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGAc           <  2:16383/91‑1 (MQ=34)
                                                                  aaCTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGAc           <  2:2627673/91‑1 (MQ=34)
                                                                   aCTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACt          <  1:35721/91‑1 (MQ=34)
                                                                    cTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTc         >  1:818783/1‑91 (MQ=34)
                                                                    cTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTc         >  2:400494/1‑91 (MQ=34)
                                                                    cTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTc         >  1:1271911/1‑91 (MQ=34)
                                                                     tCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTcc        >  1:5368369/1‑91 (MQ=34)
                                                                     tCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTcc        >  1:2267280/1‑91 (MQ=34)
                                                                        aTGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCttt     <  1:6458014/91‑1 (MQ=34)
                                                                          gTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCttttt   <  2:1115100/91‑1 (MQ=32)
                                                                                        |                                                                             
AACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTG  >  USA300TCH1516_ALE/36404‑36569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.