New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 2937444 (0.950)5 (0.010) 5/250 NT 1.2% intergenic (‑263/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 2949 402 (0.900)intergenic (‑275/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 548 total aligned reads displayed.

ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGT  >  NC_012417/2797‑3077
                                                                                                                                            |                                                                                                                                            
 tttttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACg                                                                                                                                             <  1:230432/141‑1 (MQ=255)
   tttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGCCTTTTTAGAAAGTTTGATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAACGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                           >  1:93531/1‑141 (MQ=255)
   tttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                           <  2:6166/141‑1 (MQ=255)
   tttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                           <  1:62466/141‑1 (MQ=255)
     taattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgtg                                                                                                                                         <  2:107624/141‑1 (MQ=255)
           tGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTAATTGGTTTTCACATCACCTTGAAAAGTGTGGGGGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                                   >  1:184610/1‑141 (MQ=255)
             ttAATTCGATTTTATTTGATAATCCTGTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAg                                                                                                                                 >  1:158647‑M2/1‑140 (MQ=255)
               aaTTCGATTTTATTTGATAATCCTTTTGAGTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgtt                                                                                                                               >  2:56988‑M2/1‑138 (MQ=255)
               aaTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgtt                                                                                                                               >  1:200900‑M2/1‑138 (MQ=255)
                agtcgATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                              >  2:121711‑M2/3‑137 (MQ=255)
                aTTCGATTTTATTTGATAATTCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                              >  2:29875‑M2/1‑137 (MQ=255)
                  tCGATTTTATTTTATAATTCGTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGTTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACAAGTttct                                                                                                                            <  2:164586/141‑1 (MQ=255)
                  tCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                            <  1:192916/141‑1 (MQ=255)
                  tCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                            <  1:362620/141‑1 (MQ=255)
                   cgtttttattttaTAATAGTTTTTACTTTTTAGAAAGTTTTATTTATTGTTTGGTTGTCACATTAATTTATTTAAGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttctt                                                                                                                           <  2:274075/138‑1 (MQ=255)
                    gATTTTATTTGTTGAACTGTGTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  2:290805/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:124083/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:240568/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:36514/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACAGTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  2:148482/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGAATTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  2:157182/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGAATTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACAGTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  2:31821/141‑1 (MQ=255)
                    gATTTTATTTGAGAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTAATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  2:302098/141‑1 (MQ=255)
                     aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                                                                         <  2:225607/141‑1 (MQ=255)
                       tttATTTGATAATTCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTTGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:101660/141‑1 (MQ=255)
                         tATTTGATAATTCTTTTGACTTTTTATAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  2:175341/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     >  1:335710/1‑141 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:38124/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:116824/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:219758/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:198093/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  2:354007/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  2:375225/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgta                                                                                                                     <  2:262974/141‑2 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAAGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:373308/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTAGTCCTGTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:73652/141‑1 (MQ=39)
                          aTTTGATAATCCTTTTTACTTTTTAGAAAGGTTTATTTATTCATTGGTTTTCACATTAATTTATCTAGTTTTAGAGGTTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                    <  1:389136/141‑1 (MQ=39)
                          aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGTGTCATCAAAAGAAGAAGGACTCGGTTGTTTTTTGAAACGAGTGTGAACAAGTTTCTtcttgttt                                                                                                                    >  2:336338/1‑139 (MQ=255)
                          aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                    <  1:311130/141‑1 (MQ=255)
                          aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                    <  1:375639/141‑1 (MQ=255)
                           tttGATAATCCTTTTGATTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtctt                                                                                                                   <  2:342414/141‑1 (MQ=255)
                             tGATAATTGTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGAGTCATAAAAAGAAGCAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGa                                                                                                                 <  2:297132/141‑1 (MQ=255)
                             tGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGa                                                                                                                 <  2:168319/141‑1 (MQ=255)
                                 aaTCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACt                                                                                                             <  1:29461/141‑1 (MQ=255)
                                       tttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtatatat                                                                                                       >  2:217971/1‑140 (MQ=255)
                                       tttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAg                                                                                                       >  2:308451/1‑141 (MQ=255)
                                          tgcTTTGTGGATAGTTTTATGTAGTGTTTGGGTTTCACATTAATTTATTTAGGTTTAGAGGGTGATAATAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaaa                                                                                                    <  2:348922/139‑1 (MQ=37)
                                          gACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaaa                                                                                                    <  1:300209/141‑1 (MQ=255)
                                           aCTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGCCTCGAGGGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAAt                                                                                                   <  1:350804/141‑1 (MQ=38)
                                             tttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGACTTTCTTCTTGTCTTGTTAATATATAGAACTaa                                                                                                 >  2:53639/1‑141 (MQ=255)
                                              ttttATAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGTTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                <  2:92084/141‑1 (MQ=255)
                                               tttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                                                                               >  2:191697/1‑141 (MQ=255)
                                                ttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTc                                                                                              <  1:53696/141‑1 (MQ=255)
                                                    aaaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTATGAACGAGTTAATTCTTGTTTTGAAACTATAAAGAAATAACTCGAtt                                                                                          >  2:235406/1‑141 (MQ=255)
                                                    aaaGTTGTATTTCTTCATTGGTTTTCATATTAATTTATTTAGGTTTAGTGGGTTATAAAAAGAAGAAGGAATATGTTGTTTTTTGAAACGAGTGTGAACGAGTTTGTTCTTGTCTTTATACTATATAGAAATAACTCGAtt                                                                                          <  2:68899/141‑1 (MQ=38)
                                                      aGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAGAAGAGTGGGAGCGAGGTTCTTCTTGTCTTGATGTTATATAGAAATAAcgcggtgtt                                                                                        >  1:109052/1‑136 (MQ=255)
                                                      aGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                                                                        >  1:38412/1‑141 (MQ=255)
                                                                attCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAg                                                                              <  1:129133/141‑1 (MQ=255)
                                                                 ttCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGGCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGGAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATCTATATAGc                                                                             >  1:137215/1‑141 (MQ=255)
                                                                 ttCATTGGTTTGCACATTAATATCTGTAGGTTTAGAGGGTCATAAAATGCATAAGGAATAGATTGTTTTTTAACGTGAGTGTGAACCAGTTTCATCTTCTATTGATCGTATATGGCAGTAACTCTATTTTATATCTATAGc                                                                             >  2:358292/1‑141 (MQ=255)
                                                                  tCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCt                                                                            <  2:187208/141‑1 (MQ=255)
                                                                     ttGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtatatatatccctatt                                                                         >  1:283031/1‑134 (MQ=255)
                                                                         ttttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTg                                                                     >  1:110271/1‑141 (MQ=255)
                                                                             tagaTTAATTTATTTAGGTTTAGATGGTAATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGa                                                                 <  2:39060/138‑1 (MQ=255)
                                                                             cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTTTTTTTTTTTGAACGAGTTTCTTCTTGTCTTGATTCTATATAGTAATTACTCGATTTTATTTATATAGCTGTACCTGTTgt                                                                 >  2:331340/1‑140 (MQ=255)
                                                                                    agatattgaCGTTGAGAGGGTAATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTTTATATATAGCTGTAACTGTTGATATTACa                                                          <  1:143916/138‑1 (MQ=38)
                                                                                     tttatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAg                                                         <  1:21298/141‑1 (MQ=255)
                                                                                       tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtg                                                       >  2:140089/1‑141 (MQ=255)
                                                                                       tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtg                                                       >  2:127665/1‑141 (MQ=255)
                                                                                        ttttaGTTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTGTGAAACGAGTGTAAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtgt                                                      <  2:268154/140‑1 (MQ=255)
                                                                                         tttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGtt                                                     <  2:134082/141‑1 (MQ=255)
                                                                                           taGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTa                                                   <  1:317099/141‑1 (MQ=255)
                                                                                               tttAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACg                                               >  1:102000/1‑141 (MQ=255)
                                                                                                  agagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgtgt                                            >  1:84437/1‑141 (MQ=255)
                                                                                                   gagGGTCATAAAAAGAAGAAGGTAGATGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                           <  1:347051/141‑1 (MQ=255)
                                                                                                   gagGGTCATAAAAAGAAGAAGGAATAGTTTGTTTTTTGAGACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                           <  2:44425/141‑1 (MQ=255)
                                                                                                   gagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTTTTTTTTTTTGAACGAGATTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATATCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                           >  2:19698/1‑141 (MQ=255)
                                                                                                               aagaagaagGAATAGGTTGTTTTTTGAAACgagtgtgaacgagtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaatacaactttctaaaaagtc                               >  1:65687‑M1/1‑30 (MQ=255)
                                                                                                               aagaagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGaa                               <  1:86541/141‑1 (MQ=255)
                                                                                                                  aagaatGAATATGTTGTTGTTTGAAACTAGTGTCAACGAGTTTTTGTTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATTTAGTTGCAACTGTTGATATTACATTGTTTAAACGTGTTTTTGTGCGTGAAAgg                            <  2:247862/141‑1 (MQ=255)
                                                                                                                  aagaagGAATAGGTTGATTTTAGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                            <  1:245188/141‑1 (MQ=255)
                                                                                                                  aaaaagGAATAGGTTGTTTTTTAAAACGAGTGTGTACGAGTTTCTTCTTGTATTTATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                            <  2:283418/138‑1 (MQ=255)
                                                                                                                   agaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGa                           <  1:247590/141‑1 (MQ=255)
                                                                                                                    gaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGaa                          >  1:328272/1‑141 (MQ=255)
                                                                                                                    gaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGaa                          >  1:250126/1‑141 (MQ=255)
                                                                                                                     aagGAATATGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGaaa                         <  2:2543/141‑1 (MQ=255)
                                                                                                                       ggAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAAt                       >  1:267541/1‑141 (MQ=255)
                                                                                                                        gAATAGGTTGTTTTTTGAAACgagtgtgaacgagtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggatt                      >  1:1470‑M1/1‑21 (MQ=255)
                                                                                                                         aaTAGGTTGTTTTTTGAAAGGAGTGTGAACGAGGTTGTTATTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAAttt                     <  2:113634/141‑1 (MQ=255)
                                                                                                                            aGGTTGTTTTTTGAAACGAGTGAGAACGAGTTTCTTTTTGTCTTGATACTATATAGAAATAAATAGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGAc                  <  2:159605/141‑1 (MQ=255)
                                                                                                                                  ttttgtGAAAGTAGTGTTAACTAGTTTCTTCTTGTATTGATACTAAATAGAAATATTGTGATTTACTATATATAGCTGTAACTGTTGATATTACAGATGTTATACTTGGTGTTGGGCGTGAAAGGAAAATTTGACAATaaa            <  2:64987/141‑1 (MQ=255)
                                                                                                                                  taatttGAAACGAGTGTGAACGAGTTTCTTTTTGTATTATTACTATATAGAAATAACTCGATTGTATATAGATAGCTGTAACTGTTGATATTACAGTGTTTATCCGTGTAGTTCTGCGTGAAAGGAAAATTTGAAAAGaaa            <  2:7711/138‑1 (MQ=255)
                                                                                                                                   tttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATAAAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaa           <  1:58846/141‑1 (MQ=255)
                                                                                                                                     ttttAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaaaa         <  1:256984/141‑1 (MQ=255)
                                                                                                                                         aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaat     >  2:367525‑M1/1‑4 (MQ=255)
                                                                                                                                         aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaat     >  1:17568‑M1/1‑4 (MQ=255)
                                                                                                                                          aaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaatt    >  2:321371‑M1/1‑3 (MQ=255)
                                                                                                                                          aaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttataacctgctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaatt    >  1:150983‑M1/1‑3 (MQ=255)
                                                                                                                                          aaCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCa    <  2:38412/141‑1 (MQ=255)
                                                                                                                                            cGAGTGTGAACGAgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaattaa  <  2:208809‑M2/141‑129 (MQ=255)
                                                                                                                                            |                                                                                                                                            
ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGT  >  NC_012417/2797‑3077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.