| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 848604 = | 19 (0.590) | 3 (0.100) | 3/244 | NT | 14.3% | intergenic (+609/‑271) | trxB/USA300HOU_RS04145 | Thioredoxin reductase/Nucleotide‑binding protein |
| ? | USA300TCH1516_ALE | 848625 = | 18 (0.600) | intergenic (+630/‑250) | trxB/USA300HOU_RS04145 | Thioredoxin reductase/Nucleotide‑binding protein | |||||
AGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCTTTTAAATGATGTATATTT > USA300TCH1516_ALE/848487‑848762 | aGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCtg < 1:257284/141‑1 (MQ=255) tGGGAATCCAATTTCTCTATCTTGCGGCCGACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTgg < 1:245079/141‑1 (MQ=255) gggAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACCCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTggg < 1:227617/141‑1 (MQ=255) atcaatgtcctagggtctataatattatattgctagtagttgactgaatgaaaatgcgcttgcaacaagcttttttcaactctagtcaggggccccaacacagagaatttcttttcgaaattctCTGTGTTGGGGCCCCTg < 1:349927‑M2/17‑1 (MQ=255) actgctctATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGAc < 1:166111/137‑1 (MQ=255) cctagagtctataatattatattgctagtagttgactgaatgaaaatgcggttgcaacaagcttttttcaactctagtcaggggccccaacacagagaatttcttttcgaaattctCTGTGTTGGGGCCCCTGACTAGAGt < 1:74083‑M2/25‑1 (MQ=255) ttggttgggCACACACCCCACGTCGCATTGTCTGGAGAAGTTCTTTTCGAAATTCTCTGTGTTGGTGTGCACACCCTAACTCGCGTTGCCTGTAGAAGTTCTTTTCGAAATGCTCTGTGTTGGGGCCCCTGACTAGAGTTg < 2:204112/135‑1 (MQ=18) tGTAGAATTGCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTttcattca < 2:151355/141‑1 (MQ=255) gTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAACCGCATTTTCATTCAg > 1:358671/1‑141 (MQ=255) ttttCGAAGTGCTCGGTGTTGGGGACCACACCCCAACTCGCGTTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAActacta < 2:123167/141‑1 (MQ=14) tttCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAg < 1:63265/141‑1 (MQ=255) ttCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGc < 1:309924/141‑1 (MQ=255) atttCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatat < 2:251077/139‑1 (MQ=255) tatgtgTTGGGGCGCACGCCCAAACTCGCATTGCCTGTAGAATTTCTTTTGGAAATTGTGTGTGTTGGGGCCACTGACTAGAGGTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatataatat < 2:290344/139‑1 (MQ=17) tgtTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATtata > 1:153733/1‑141 (MQ=255) gtgggccccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATGTTGTAGACTCTAgg > 1:10816/6‑141 (MQ=255) actctagtcaggggccccaacacagAGAATTTCGAAAAGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAACCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACTCTAgg < 1:74083‑M1/116‑1 (MQ=255) cacCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACa < 1:364595/141‑1 (MQ=255) acCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATCGCACCTAGCACAt > 1:344940/1‑141 (MQ=255) ccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGa < 1:242279/141‑1 (MQ=255) caggggccccaacacagAGAATTTCGAAAAGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGAt < 1:349927‑M1/124‑1 (MQ=255) cAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGAt < 2:286883/141‑1 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTccc < 1:58462/141‑1 (MQ=255) gggATTGCTTTTCGAAATTCGCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCt > 2:167515‑M1/4‑141 (MQ=255) AGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCt > 1:136987‑M1/1‑141 (MQ=255) tAATTTCTTTTCTAAATTCTCTGTGTTGTCGCCCCTGTCTAGCGTTTAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCACACTCCtt > 2:163408‑M1/2‑141 (MQ=255) TTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCTTTTaa < 1:13902‑M1/141‑1 (MQ=255) tcgaacagaaattatCTGTGTTGGGGCCCCTGCCTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATCTTATCGACACTAGGACCTTGATATATGTCCCACGCTCCTTTTaaa > 2:24173‑M2/16‑141 (MQ=255) tctCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTGCATTCAGTCAACTACTAGCAATCTAAGCTTATAGACCCTAGGCCATTGGTTGATGTCCCAAGATACTTTTAAATGATATATAttt > 2:4799‑M2/4‑141 (MQ=255) | AGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCTTTTAAATGATGTATATTT > USA300TCH1516_ALE/848487‑848762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |