Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2176681–2179433	2181135–2179437	5–4455	10 [9]	[9] 11	ilvA/USA300TCH1516_02069	L‑threonine dehydratase biosynthetic IlvA/tRNA‑Gly

ACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCA  >  USA300TCH1516_ALE/2176540‑2176714                                                                                                                                             |                                   aCCTCCTTGCTATAGTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCa                                    >  1:137375/1‑141 (MQ=32)           tataGTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTcc                          <  2:299426/141‑1 (MQ=32)           tataGTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCGTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTcc                          >  1:141272/1‑141 (MQ=17)            ataGTCACCAGACATATGACTGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGACTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCa                         <  1:145741/141‑1 (MQ=17)            ataGTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAATCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTACa                         >  2:97966/1‑141 (MQ=17)             taGTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTCGTATTCGTCAGCTCCACCTGTGACCATGCTTcccc                        >  1:240371/1‑139 (MQ=255)                tCACCCGACATATGAATGTAAATTATACATTCAAAACTATATAGTAAGTAAAAGGGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTc                     <  2:347980/141‑1 (MQ=12)                           atGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGAAAGCTTCGTATTTGTCATCTACACATGTCACCATGCTTCCACATCAAACCTATTaa          >  2:83159/1‑141 (MQ=11)                            tGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAAc         >  1:304907/1‑141 (MQ=32)                                   aaaTTATACATTCAAAACTAGATAGTAAGTAACAGTGATTTTGATTCGCAAAACATTTATTTTGATTAAGTCTACGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCtcctca  >  2:346243/1‑141 (MQ=255)                                                                                                                                             |                                   ACCTCCTTGCTATAGTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCA  >  USA300TCH1516_ALE/2176540‑2176714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑