mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 512,643 | 0 | A | G | 47.5% | 3.1 / 85.6 | 59 | intergenic (+711/‑6052) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| * | USA300TCH1516_ALE | 111,512 | 0 | A | G | 29.2% | 74.5 / 39.0 | 48 | S194S (TCA→TCG) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 111,516 | 0 | C | A | 28.9% | 103.3 / 30.1 | 45 | Q196K (CAA→AAA) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 110,660 | 0 | T | A | 28.6% | 41.1 / 22.9 | 28 | I173I (ATT→ATA) | USA300HOU_RS00515 | putative lipoprotein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 895785 = | 32 (0.930) | 3 (0.100) | 3/260 | 3.2 | 9.2% | coding (806/822 nt) | metQ_2 | Methionine‑binding lipoprotein MetQ |
| ? | USA300TCH1516_ALE | = 909740 | 31 (1.020) | intergenic (‑663/‑371) | USA300HOU_RS04500/csbD_1 | hypothetical protein/Stress response protein CsbD | |||||
| * | ? | NC_012417 | 1040 = | 966 (0.980) | 4 (0.000) | 4/258 | 62.9 | 0.46% | coding (155/192 nt) | USA300HOU_RS15665 | hypothetical protein |
| ? | NC_012417 | 1090 = | 867 (1.000) | coding (105/192 nt) | USA300HOU_RS15665 | hypothetical protein | |||||