| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 800928 | 35 (0.780) | 3 (0.070) | 3/244 | NT | 7.0% | intergenic (+62/‑289) | hisC_1/USA300HOU_RS03915 | Histidinol‑phosphate aminotransferase/Putative 5'(3')‑deoxyribonucleotidase |
| ? | USA300TCH1516_ALE | 801948 = | 47 (1.110) | intergenic (+189/+435) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase | |||||
AAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCT > USA300TCH1516_ALE/801810‑802080 | gtgttagaattacaattggttttaaagaacaaaatgataaaatgttagaagttttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaaca > 2:484792‑M2/140‑140 (MQ=255)aaGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACAt < 1:360474/140‑1 (MQ=255) tgACTGAGATGAACTTTTATGGCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACACCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATa < 2:187546/140‑1 (MQ=255) aCTGAGATGAACTTTTATGACTTAGACACTACAACACTATATTGGCAGTAGTGGACTGCGCGGCTCCAACATAGCGACATCGGAACGCCAA‑TTTCTACAGCCAATGCACGTTGGGGTGGGCCCCAACATAAAGaagtcca > 2:528541/1‑135 (MQ=255) cTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACtt > 1:339102/1‑140 (MQ=255) gaTGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTc > 1:486088/1‑140 (MQ=255) aaCTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTAGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTa > 1:377159/1‑140 (MQ=255) aagaacaaaatgataaaatgttagaagttttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGaa > 2:184903‑M2/116‑140 (MQ=255) ctATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAAt < 1:445980/139‑1 (MQ=255) tGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGaaa < 2:207247/136‑1 (MQ=255) tGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGaaa > 1:207247/1‑136 (MQ=255) tAGACACTACAACACTATATTTGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTGTTCTTTAGAAATTAGTAttt > 1:251366/1‑140 (MQ=255) cTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATg > 1:339299/1‑140 (MQ=255) cTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATg > 1:134633/1‑140 (MQ=255) caacaCTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCGACAGACAATCCAAGTTGGGGAGGGCCCTAACATAAAGAAATACTTTTTGTTTAGAAAGTCGTATTTCTTATGCAt > 2:405501/1‑140 (MQ=17) acgcTATATTGGCAGTAGTTGACTGCGGGGCCCCTACATAGAAAAATAGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGa < 1:239730/137‑1 (MQ=255) acacTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGa < 2:422956/140‑1 (MQ=255) acacTATAGTGGCAGTAGTTGGCTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGa < 2:543989/140‑1 (MQ=255) gaagttttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgt < 1:484792‑M2/48‑1 (MQ=255) atatTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTa > 1:170421/1‑140 (MQ=255) atgggCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAAc < 1:100858/137‑1 (MQ=255) atTGGCACGAGTTCACTGCGGGGACCCAACCTAGAGAAATTGACACCCCAA‑TTTCTACAGACAATGCAAGTTGTAGTTTTTCCTAATATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAAc < 2:63478/140‑1 (MQ=14) ttGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAACTTAGTATTTCTTCTGCATGAGTGTAACt > 1:481415/1‑140 (MQ=255) tagtTGAGTGCGAGGCACCAACATAGAGAGATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCAt < 2:69292/140‑1 (MQ=255) tagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGCATTTCTTATGCATGAGTGTAAGTCATGCAt > 2:533955/1‑140 (MQ=255) tagtTGACTGCGGAGCCCCAACATAGAGAAATTGGAACGATAACTATATA‑ATTCTGAGAAAGTAGTGGTGGTCCCCAACATAAAGAAATACTTTTTCTTTATAAATTAGTATTTCTTATGCATGAGTTTAACgcatgcat > 2:121409/1‑140 (MQ=12) ttGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCa < 1:162130/140‑1 (MQ=255) ttGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCa < 2:169535/140‑1 (MQ=255) tggACTGCGGGGCCCCAACATAGATCAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCa < 2:169616/138‑1 (MQ=255) tGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCat > 2:160467/1‑140 (MQ=255) gACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCata > 1:61573/1‑140 (MQ=255) acggCGGGGCACTGACAGAGAGAAAGTGGAACGCCAA‑TTACTAAAAACAATGCAATTTGGGGTGGGCCCAAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCatat < 2:412187/137‑1 (MQ=17) cgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATAttttt < 1:372137‑M2/71‑1 (MQ=255) ccccAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTa < 1:162013/140‑1 (MQ=255) ccccAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTa > 2:16224/1‑140 (MQ=255) cccAACATAAAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTac < 1:98417/140‑1 (MQ=255) ccAACATAGAGAAACTGGAACGCCAA‑TGTCTACAGACAATGCAAGTTGGGGGGGGCCCCAACATAAAGAAATACTTTTTCTTGAGAAATCAGTATTGCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTaca < 1:188300/140‑1 (MQ=18) cAACATAGAGAAATTGTAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTacac < 1:547120/140‑1 (MQ=255) cAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTacac < 1:86104/140‑1 (MQ=255) agagGAATTGGAACGCCCA‑TTAAGTTATACAATGGAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGc > 2:259807/1‑140 (MQ=17) agagAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGc > 2:6215/1‑140 (MQ=255) agagAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGc > 1:532424/1‑140 (MQ=255) aaaTTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTGTTTTGAAGAAGTGAAACTCATGCCTTCATAGTTTTAAGTACACATTAGCtgtg > 1:415024/1‑140 (MQ=18) aaaTTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCtgtg < 2:61573/140‑1 (MQ=255) gcgttccAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAAt > 1:542058/6‑140 (MQ=255) aCGTCAG‑TTGCTACAGACGATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCACAATTTTAAGTACACATTAGCTGTGACTAATGa < 2:40097/140‑1 (MQ=18) gCCAA‑TTTCTACAGACAATGGCAGTTGGGATGGGCCCCAACCTCATTGGAGCCGTTTGGTTTAGAACTTAGTATTTGTTATGCAGGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATa < 1:264150/140‑1 (MQ=18) aa‑TTTCGACAGGCGATGCAATTTGAGGTTGGCCCCAGCATAAAGAGATACGTTTTCTTTAGAAATTAGTATTGCGTATGCAGGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAg < 2:255366/140‑1 (MQ=18) ttCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACAAATTAGCTGTGACTTATGATaacgcat > 1:264816/1‑135 (MQ=255) ggggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTa < 2:28496/140‑1 (MQ=255) ggggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTa < 2:541416/140‑1 (MQ=255) ggggTGGGACTCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTa < 2:512837/140‑1 (MQ=255) gTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTc < 1:534759/140‑1 (MQ=255) gCCCTAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTGAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTc < 2:396147/140‑1 (MQ=255) ccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCt < 1:450973‑M2/133‑1 (MQ=255) | AAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAA‑TTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCT > USA300TCH1516_ALE/801810‑802080 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |