Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | USA300TCH1516_ALE | 2,532,298 | A→T | 100% | T15T (ACA→ACT) | femA_3 → | Aminoacyltransferase FemA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 2,532,298 | 0 | A | T | 99.2% | 156.0 / ‑6.3 | 53 | T15T (ACA→ACT) | femA_3 | Aminoacyltransferase FemA |
Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (13/38); minor base G (0/1); total (14/39) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
ATTTGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGAC > USA300TCH1516_ALE/2532166‑2532426 | aTTTGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGc < 1:471958/140‑1 (MQ=255) tttGTAATCAAGATTTGATAAAATACAAAAAGAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCa < 1:563888/140‑1 (MQ=255) tGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCAtt < 1:223590/140‑1 (MQ=255) cAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTcac > 2:131039/1‑140 (MQ=255) ttGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTaca < 1:246322/140‑1 (MQ=255) gaaaaaataaaaAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTacaca < 2:351418/137‑1 (MQ=255) gATAAAAGAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACATTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTacaca < 2:215186/140‑1 (MQ=255) ataaaataaaAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTacacac > 1:386098/1‑140 (MQ=255) ataaaataaaAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTacacac < 1:421367/140‑1 (MQ=255) taaaataaaaAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTAcacaca < 1:365453/140‑1 (MQ=255) aaaataaaaAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGAGGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACaa < 2:540361/140‑1 (MQ=255) aataaaaAAATAGCATTATTAATAAATTCGAAACTTATAGTTGCATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATc < 1:340800/140‑1 (MQ=255) ataaaaAAATAGCCTTATTAATAAAGTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCa < 2:31152/140‑1 (MQ=255) aaaaacaTAGCATTATTAATACATTCAAAAATTATAGTGCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGc < 1:48658/140‑1 (MQ=255) aaaaaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCt > 2:469493/1‑140 (MQ=255) aaaaaTAGCATTATTAATAAATTCAAAAATTATAGTACAATTCAGAGAGGGATGAGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTAAAAAGCATTTTTCACAATACACACAATCAGCTa > 2:566293/1‑140 (MQ=255) aaaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTAt < 1:489232/140‑1 (MQ=255) aaaaTAGAATTATTAATAAATTCAAACATTATAGTTCAATTCAGCGAGGGATGGGATAAAATGAACTTTGTAACGTTGACATCGGATGAGTTCGATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTAt < 1:81464/140‑1 (MQ=255) aagaGCATTATTAATAAACTCAATAACTATAGTTCCATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTGCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTc < 1:437862/137‑1 (MQ=255) gCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAAAGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACCACAAAGCAGTTTTCACATTACACACAATCAGCTATTCATTa > 2:118746/1‑140 (MQ=255) taataaATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCAt > 2:282050/1‑140 (MQ=255) gaaaTTATAGTGCAATTGAGGTAGGGATGGGAGAAAAGGGGCTTTGTAACGTTGGCTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGAttt < 2:494373/139‑1 (MQ=255) ttATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTaaaa < 1:46621/140‑1 (MQ=255) aGTGCAATGCGGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCg < 2:568958/140‑1 (MQ=255) atgcAGAGGGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGc < 2:241542/137‑1 (MQ=255) tCATAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCAt < 2:298550/140‑1 (MQ=255) tCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCAt < 1:458642/140‑1 (MQ=255) agagagGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCACTGCGTTACGGTCAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCt < 1:417285/140‑1 (MQ=255) agagagGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCt < 2:208800/140‑1 (MQ=255) agagagGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCt < 2:279861/140‑1 (MQ=255) agGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTGCAATGCGTTTACTACAAAGCATTTTTCACAAAACAAACAATTAGATATTCATTACAATCATAGAGTTGATTTAAAAAGAGAAATGCATCTTGTa > 2:525608/1‑140 (MQ=255) gggatgggatAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAg < 1:347827/140‑1 (MQ=255) ggatgggatAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAgg > 1:300979/1‑140 (MQ=255) gatgggatAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACGCACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAggg < 2:333570/140‑1 (MQ=255) atAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGCGTTGAGTTAAAAGTCGATGTGCATCTTGTAGGGGTTaaa > 1:130161/1‑140 (MQ=255) ggaCTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAGAGCATTTTTAACATTACACACAATCAGCTATTCAGTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACa < 2:282866/138‑1 (MQ=255) aaatttGTAACGTTGACTTCGGATGAGATCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCAATTCATTACAATCATAGAGGTGGTTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACaa > 1:39919/4‑140 (MQ=255) aaCTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACaa < 1:377558/140‑1 (MQ=255) aCTTTGTAACGTTGACTTCGGATGAGTGCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCAGTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAAt < 2:33544/140‑1 (MQ=255) tggagcGTTGACTTCGGATGAGTTAAATGCGATTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTc < 2:389309/135‑1 (MQ=255) tGTAACGTTGACTTCGGATGAGTTTTATGCGTTTAGTGTTAATGATTTTTCGCGTTTGCTACCATCGGCTATTCATTATCATCATAGAGTTGATTTACAAGGCGATGTGCATCCCGTAGGGGCCAAACATGACAATgcac > 2:408328/1‑137 (MQ=255) ttGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTCTTCATTACAATCATAGAGTTGATTTAAAACGCGATGTGCATCTTGCAGGGGTTGAAGATGACGATGGTCACGGGAt > 2:273918/1‑140 (MQ=255) ccTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTGGTAGGGGCGAAAGATGACAACGGTCACGTGATTGc > 2:548213/2‑140 (MQ=255) cTTCGGATGAGTTCAATGCGTTTACTACTAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTCATTGCa < 2:481527/140‑1 (MQ=255) cTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAGCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCa < 2:461438/140‑1 (MQ=255) ttCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTTCACACAATCAGCTATTCATTACAATCATAGAATTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAg < 1:273472/140‑1 (MQ=255) atcagATGAGTTCAATGCGTTTACTACAAAGCTATTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAg < 1:64766/136‑1 (MQ=255) tCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAgg < 2:181513/140‑1 (MQ=255) gTTCAATGCGTTTACTACAAAGCATTTTTCAACTTACCTACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTAt < 1:18662/140‑1 (MQ=255) aaaaaTGCGTTTACTACAAAGCATTTTTCACATTACAAACAATCAGCTATTCATAACAATCATAAAGTTGCTCTAAAAGGCGATGTGCATCTTGAAGCGGGTAAAGATGACAATGGTCAAGTGATTGCAGGATGGTTAtt > 2:450618/4‑140 (MQ=255) cAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGa < 2:233291/140‑1 (MQ=255) cAATGCGTTTACTACAAAGCATTTTTCACATTAAACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGa < 2:56262/140‑1 (MQ=255) ggtGCGTGTACTACAAAGCATTTGTCACGTTACACACAATCAGCTATGCATTACAATCATAGAGTGGATGTAAAAGGCGATGTGCATCTTGTAGGGGTGAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGAc < 1:454705/138‑1 (MQ=255) | ATTTGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGAC > USA300TCH1516_ALE/2532166‑2532426 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |