Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 2,821,782 A→G 5.1% intergenic (‑25/+54) flr_2 ← / ← msrAB Flavoredoxin/Peptide methionine sulfoxide reductase msrA/msrB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE2,821,7820AG 5.1% 237.4 / 2.3 79intergenic (‑25/+54)flr_2/msrABFlavoredoxin/Peptide methionine sulfoxide reductase msrA/msrB
Reads supporting (aligned to +/- strand):  ref base A (44/31);  new base G (2/2);  total (46/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.52e-01

ATCTTGATTTAATGTTGTAACAAAAGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGATATTTTTCTAAATGTTGCTGATGTTCTT  >  USA300TCH1516_ALE/2821650‑2821921
                                                                                                                                    |                                                                                                                                           
aTCTTGATTTAATGTTGTAACAAAAGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGt                                                                                                                                      >  1:504559/1‑140 (MQ=255)
  cTTGATTTAATGTTGTAACAAAAGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTAt                                                                                                                                    >  1:274729/1‑140 (MQ=255)
  cTTGATTTAATGTTGTAACAAAAGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTAt                                                                                                                                    >  1:384470/1‑140 (MQ=255)
    tGATTTAATGTTGTAACAAAAGCTATAGGTCGTGGAATAATTGATCCAATTCCTTTTTCAGAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTAttt                                                                                                                                  <  1:294920/140‑1 (MQ=255)
     gATTTAATGTTGTAACAAAAGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTACGTATATCTAGGTCTTtc                                                                                                                                 >  1:438820/1‑140 (MQ=255)
      aTTTAATGTTGTAACAAAAGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACTTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTtct                                                                                                                                >  1:155512/1‑140 (MQ=255)
      aTTTAATGTTGTAACAAAAGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTtct                                                                                                                                <  1:241079/140‑1 (MQ=255)
         tAATGTTGTAACAAAAGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCAAGATATTTCTCCg                                                                                                                             >  2:239712/1‑140 (MQ=255)
          aaTGTTGTAACAAAAGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGa                                                                                                                            >  2:255092/1‑140 (MQ=255)
              ttgtAACAAAAGCTATAAGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGAtttt                                                                                                                        <  2:241918/140‑1 (MQ=255)
                gtAACAAAAGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCGACCTCTTTTCTAAGTATATCTAGGGATTTCTCCGttgttga                                                                                                                      >  1:174842/1‑139 (MQ=255)
                 tAACAAAAGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGt                                                                                                                     <  1:395987/140‑1 (MQ=255)
                  aaCAAAAGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGtt                                                                                                                    <  1:992/140‑1 (MQ=255)
                      aaaGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAAtt                                                                                                                >  1:272711/1‑140 (MQ=255)
                       aaGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAAttt                                                                                                               >  2:218408/1‑140 (MQ=255)
                        aGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCCGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTa                                                                                                              >  1:557475/1‑140 (MQ=255)
                         ggtattGGTTGTGGAATCATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTATGCATCAAACGTATACATAATACCTATCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTaa                                                                                                             <  2:504559/138‑1 (MQ=255)
                         gCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTaa                                                                                                             >  1:14501/1‑140 (MQ=255)
                          cTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTaaa                                                                                                            <  1:249516/140‑1 (MQ=255)
                           tataGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGACTTTGGTTAATTTAAAc                                                                                                           >  1:68820/1‑140 (MQ=255)
                             taGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGTTTAATTTAAAAAt                                                                                                         >  2:390893/1‑140 (MQ=255)
                               ggTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGCTTTTGGTTCATTTAAACATCt                                                                                                       >  1:30490/1‑140 (MQ=255)
                                gTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATGTCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTa                                                                                                      >  1:278633/1‑140 (MQ=255)
                                gTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATGTCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTa                                                                                                      >  1:14344/1‑140 (MQ=255)
                                   gTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATtc                                                                                                   >  1:110539/1‑140 (MQ=255)
                                    tGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATtct                                                                                                  <  1:425726/140‑1 (MQ=255)
                                        ataatTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTctcctc                                                                                              >  2:338888/1‑140 (MQ=255)
                                         taatTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCctct                                                                                             >  1:367588/1‑140 (MQ=255)
                                         taatTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCctct                                                                                             >  1:39080/1‑140 (MQ=255)
                                            ttGCACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGaa                                                                                          <  2:53862/140‑1 (MQ=255)
                                             tGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTGTGGTTAATTTAAAACCCTATTCTATCCTGaaa                                                                                         >  2:117014/1‑140 (MQ=255)
                                              gcatcgaTTAATACTTTATAGTTTTCTCTCTCAGTCTATGATTGTGCATCATACGTATACATAATACCTACCTCTTTTCTATGTATATCTAGGTATTGCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGaaaa                                                                                        <  1:180941/134‑1 (MQ=255)
                                              gAACCAATTAATGATTTATAGGTTGCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGaaaa                                                                                        <  2:130067/140‑1 (MQ=255)
                                              gAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGaaaa                                                                                        <  1:461782/140‑1 (MQ=255)
                                               aaCCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAAt                                                                                       >  1:140561/1‑140 (MQ=255)
                                                aCCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATACCTAGGTATTTCTCCGGTTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATc                                                                                      >  1:47813/1‑140 (MQ=255)
                                                   aaTTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACt                                                                                   <  1:255092/140‑1 (MQ=255)
                                                       aataatTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTAGTTAATTTAAACATCTGTTCTCCTCTGAAAATCACtgtta                                                                               >  1:92686/1‑136 (MQ=255)
                                                          aatTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGtattt                                                                            >  2:58370/1‑140 (MQ=255)
                                                          aatTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTACTCTGAAACTCACTTGtattt                                                                            >  2:449166/1‑140 (MQ=255)
                                                              tatgGTTTTCTCTTGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTatttattt                                                                        <  2:69041/140‑1 (MQ=255)
                                                                taGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTCTTCTCCTCTGAAAATCACTTGTATTTATTTAg                                                                      >  2:391472/1‑140 (MQ=255)
                                                                taGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTTttcatttaa                                                                      >  2:195574/1‑139 (MQ=255)
                                                                  gTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCa                                                                    >  2:2132/1‑140 (MQ=255)
                                                                     ttCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTCAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAAt                                                                 >  2:451303/1‑140 (MQ=255)
                                                                       ctctAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCt                                                               <  2:474512/140‑1 (MQ=255)
                                                                          tAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCtttt                                                            <  2:272711/140‑1 (MQ=255)
                                                                            gCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGa                                                          >  1:466040/1‑140 (MQ=255)
                                                                            gCAGGTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGa                                                          <  1:188298/140‑1 (MQ=255)
                                                                              aGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTACGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGaaa                                                        >  1:220518/1‑140 (MQ=255)
                                                                              aGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGaaa                                                        <  1:99397/140‑1 (MQ=255)
                                                                                 tAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATGTCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAatat                                                     <  2:14344/140‑1 (MQ=255)
                                                                                 tAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATGTCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAatat                                                     <  2:278633/140‑1 (MQ=255)
                                                                                 tAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAatat                                                     <  1:338888/140‑1 (MQ=255)
                                                                                   aTGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGa                                                   >  1:405120/1‑140 (MQ=255)
                                                                                     gATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATATAGGTATTTCTCCGATTTTGGTTAATTTAAACATATATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAACTCTTTTGAAATATGaaa                                                 >  2:1779/1‑138 (MQ=255)
                                                                                      aTTGTGCATCAAACGTATACATTATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGacac                                                <  2:363908/140‑1 (MQ=255)
                                                                                            cATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTACTTTAAACATCTATTGTCCTCTGAAAACGACTTGTATTTATTCAACACATCTTTTGAAATATGACACCTGTGc                                          >  2:572615/1‑140 (MQ=255)
                                                                                            cATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGc                                          <  1:218627/140‑1 (MQ=255)
                                                                                              tCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCat                                        >  1:441994/1‑140 (MQ=255)
                                                                                                    gTATACATAATACCTACCTCTTTTCTTAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATAtcttc                                  <  2:90817/140‑1 (MQ=255)
                                                                                                        aCATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGa                              <  1:338126/140‑1 (MQ=255)
                                                                                                          ataattCCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGata                            <  2:171370/140‑1 (MQ=255)
                                                                                                          ataataCCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGata                            <  2:266252/140‑1 (MQ=255)
                                                                                                              tacctaccTCTTTTCTAAGTATATCTAGGGATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCGTCTGAAAATCACTTGTATTTATTTAGCAAATATTTTGAAATATGACACATATGCATATCTTATGGATAtttt                        >  2:457193/1‑140 (MQ=255)
                                                                                                                 ctacctCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGTTATTCTCTTGTATTTTTTTAGCTAATCTTTTAAAATATAACTCATATACATATCTTCTGTATAtttttat                     >  1:13486/1‑138 (MQ=255)
                                                                                                                 ctacctCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGATATTTTTCt                     >  2:111688/1‑140 (MQ=255)
                                                                                                                 ctacctCTTTTCTAAGTATACCTATGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCCTATCATCTGGATATTTTTCt                     >  2:393517/1‑140 (MQ=255)
                                                                                                                    cctCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGATATTTTTCTaaa                  >  1:296684/1‑140 (MQ=255)
                                                                                                                     ctctTTTCTAAGTATATCTAGGTATTTCTCCGATTTTTGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGATATTTTTCTAAAt                 <  2:571840/140‑1 (MQ=255)
                                                                                                                        ttttCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTATGCACCTCTTTCTAAATGtt              >  2:368759/1‑140 (MQ=255)
                                                                                                                          ttCTAAGTATATCAAGTAATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGATATTTTTCTAAATGTTGc            >  2:500203/1‑140 (MQ=255)
                                                                                                                           tCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGATATTTTTCTAAATGTTGCt           >  2:451631/1‑140 (MQ=255)
                                                                                                                           tCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGATATTTTTCTAAATGTTGCt           <  1:104098/140‑1 (MQ=255)
                                                                                                                             tAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATTTTCTGGATATGTTTCTAAATGTTTCTGa         >  2:504228/1‑140 (MQ=255)
                                                                                                                              aaGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGATATTTTTCTAAATGTTGCTGAt        <  2:367588/140‑1 (MQ=255)
                                                                                                                              aaGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGATATTTTTCTAAATGTTGCTGAt        <  1:51755/140‑1 (MQ=255)
                                                                                                                              aaGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGATATTTTTCTAAATGTTGCTGAt        <  2:39080/140‑1 (MQ=255)
                                                                                                                                gTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGATATTTTTCTAAATGTTGCTGATGt      <  1:169107/140‑1 (MQ=255)
                                                                                                                                    atCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTAAAACTCGCATTCATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGATATTTTTCTAAATGTTGCTGATGttctt  <  1:130965/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                           
ATCTTGATTTAATGTTGTAACAAAAGCTATAGGTCGTGGAATAATTGAACCAATTAATAATTTATAGTTTTCTCTAGCAGTTAATGATTGTGCATCAAACGTATACATAATACCTACCTCTTTTCTAAGTATATCTAGGTATTTCTCCGATTTTGGTTAATTTAAACATCTATTCTCCTCTGAAAATCACTTGTATTTATTTAGCAAATCTTTTGAAATATGACACATATGCATATCTTCTGGATATTTTTCTAAATGTTGCTGATGTTCTT  >  USA300TCH1516_ALE/2821650‑2821921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: