New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 2937868 (1.010)12 (0.010) 8/236 NT 1.5% intergenic (‑263/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 2949 796 (0.960)intergenic (‑275/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1068 total aligned reads displayed.

ATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAA  >  NC_012417/2804‑3070
                                                                                                                                     |                                                                                                                                     
   ttGTTTATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                    <  2:84236/134‑1 (MQ=255)
   ttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                    <  1:348978/134‑1 (MQ=255)
    tGTTAATTTGTTTTTATTTGATAGTCTTTTTGACCTGTTAGAAAGGTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgt                                                                                                                                   <  1:396306/134‑1 (MQ=255)
     gTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgtg                                                                                                                                  >  2:477526/1‑134 (MQ=255)
      ttAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgtgt                                                                                                                                 <  2:267693/134‑1 (MQ=255)
          ttCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAAc                                                                                                                             >  1:431682/1‑134 (MQ=255)
           tCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                            <  1:31916/134‑1 (MQ=255)
           tCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACAGTAATTAATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcacact                                                                                                                            <  1:542509‑M1/134‑12 (MQ=255)
           gcGATGTTATTTGATAATCCTTTTTACTTTTTAGAAAGTTTTATGTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                            <  1:243911/133‑1 (MQ=255)
            cGATTTTATTTGATAATTCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGa                                                                                                                           <  2:538713/134‑1 (MQ=255)
               ttttATTTGATAATTCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgtt                                                                                                                        >  2:65355‑M2/1‑131 (MQ=255)
                  tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTTACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                     <  1:444118/134‑1 (MQ=255)
                  tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                     >  1:126393/1‑134 (MQ=255)
                  tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                     <  1:158659/134‑1 (MQ=255)
                   atgttaTAATCTTTTTGATTTTTTATATCGTCTTATTAAAACATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttctt                                                                                                                    <  1:411415/129‑1 (MQ=255)
                   atatGATAATTCTTGTGATTTTTTTGAATGTTTTATTGATTGATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAGAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttctt                                                                                                                    <  2:363395/131‑1 (MQ=255)
                    tttGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                   <  1:56784/134‑1 (MQ=255)
                     ttGGTAATCCTTTTGACTTTTTAGAGAGTTTTAGTTATTCTTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                                                                  <  2:245677/134‑1 (MQ=255)
                      tGATAATTCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                 <  1:371190/134‑1 (MQ=255)
                      tGATAATCCTTTTGACTTTTTAGAAAGTGTTATTGATGCATGGGTTTTCACATTAATTTATTTAGGTGTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                 <  1:69665/134‑1 (MQ=39)
                       gATAGTCCTTTTGACTTTTTAGAAAGTTGTATTTTTTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAATGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                <  2:408485/134‑1 (MQ=255)
                       gATACTCCTTTTGCCTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                <  1:189842/134‑1 (MQ=255)
                       gATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                <  2:279539/134‑1 (MQ=255)
                        agagttcTTTTGGCTTGTTAGAAAGTGTTATTGCTTCATTGATTTTCACATTAATTTATTTAGGTTTAGAGCGTCATTAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                                                               <  2:18996/128‑1 (MQ=37)
                         tAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCTTTGGTTTTCACATTATTTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                              <  1:295216/134‑1 (MQ=255)
                         tAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                              <  2:602949/134‑1 (MQ=255)
                          aaTCCTGTTGACGTTTTAGAAAGTTTTATGTATTCATTGGTTTTCACATTAATTTATGTAGGTTTAGAGGGGCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                             <  2:458038/134‑1 (MQ=39)
                              cTTGTGACTTTTTAGAAAGTTTTATTTATTTATTGGTTTTCACATTAATTTATTTAGGTTGAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGAt                                                                                                         <  1:219944/134‑1 (MQ=255)
                               ttttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATa                                                                                                        <  2:352403/134‑1 (MQ=255)
                                tttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTAACATTAATTTATATAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATAc                                                                                                       <  2:216858/134‑1 (MQ=255)
                                   gACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGACTAGGTTGTTTTTTGACACGAGTGTGAACGAGTTTCTACTTGTCTTGATACtat                                                                                                    >  1:27818/1‑134 (MQ=255)
                                    aCTTTTGAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtata                                                                                                   <  2:116999/134‑1 (MQ=255)
                                      tttttAGAAAGTTTTATTTATTCATTTGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtatata                                                                                                 <  1:201608/134‑1 (MQ=255)
                                      tttttAGAAAGTTTTATTTATTCATTGGTTTTCGCATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGGGTGAACGAGTTGCTTCCTGTCTTGATACtatcta                                                                                                 >  1:454229/1‑134 (MQ=255)
                                       ttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAATGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAg                                                                                                <  2:136183/134‑1 (MQ=255)
                                             aaaGTTTTATTTATTTGTTGGTTTTCACTTTAATGGATTTAGGTGAAGAGGGGCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATaa                                                                                          <  1:98810/134‑1 (MQ=37)
                                              aaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                         <  1:101877/134‑1 (MQ=255)
                                              aaGTTTTATTTATTCATTCGTTTTCACATTAATTTATTCAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGACCGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                         <  1:267580/134‑1 (MQ=255)
                                               aGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                                                                        <  2:91590/134‑1 (MQ=255)
                                                gTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAACAAATc                                                                                       >  2:335680/1‑134 (MQ=255)
                                                gTTTTATTTATTCATTGGATCTCTCATTAATTTATTTTGGTTTAGCAGGTCATATAAAGAATAAGGAATAGCTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTc                                                                                       <  2:290088/134‑1 (MQ=37)
                                                 ttttGTTTATTCATTGGTTGTCACATTAATTTATGTAGGTTTAGATGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGATACtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatga                                                                                      <  2:420805‑M1/134‑50 (MQ=255)
                                                    tatttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAGCGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtt                                                                                   >  2:313967/1‑134 (MQ=255)
                                                          ttCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAGTTtatat                                                                             >  1:330483/1‑134 (MQ=255)
                                                          ttCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTGTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtatat                                                                             >  2:489851/1‑134 (MQ=255)
                                                          ttCATTGGTTTTCACATGAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTCGAAACGAGTGTGAACGAGTTTCTGCTTGTCTTGATACTATATAGCAATAACTCGCTTTtatct                                                                             >  2:577511/1‑132 (MQ=39)
                                                                  ttttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCt                                                                     >  2:567777/1‑134 (MQ=255)
                                                                   tttCACATTAATTCATTTAGGTTTATAGGGTCATAAAAAGCAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTg                                                                    >  2:434680/1‑134 (MQ=255)
                                                                     tCACATGAATTTATTTAGGTTTAGAGTGTCATAAAAAGAAGAAGGAAGATGGTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATAGAGCTGTa                                                                  <  1:557384/134‑1 (MQ=38)
                                                                      cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTaa                                                                 >  2:19678/1‑134 (MQ=255)
                                                                      cacaTTAATTTATTTAGGTTTAGAGGAACATAATAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGCTTTTATATATATAGCTGTaa                                                                 >  2:73477/1‑134 (MQ=255)
                                                                       acaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATCTAGAAATAACTCGATTTTATATATATAGCTGTAAc                                                                >  2:522849/1‑134 (MQ=255)
                                                                       acaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAAc                                                                >  1:465053/1‑134 (MQ=255)
                                                                         aTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTg                                                              <  2:343308/134‑1 (MQ=255)
                                                                         aTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTg                                                              <  1:290348/134‑1 (MQ=255)
                                                                           tAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtatatata                                                                          >  1:90191/1‑120 (MQ=255)
                                                                                tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGatat                                                       >  2:105633/1‑134 (MQ=255)
                                                                                 atttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATCGTAATAGCACGATTTTTTTCATATAGCAGTAACTGTTgctctt                                                      >  2:395865/1‑129 (MQ=37)
                                                                                 atttaGGTTGAGAGGGTCATAAATAGAAGAAGCAATAGGTTGTTTTTTGAAAGGAGTGTGAACGAGTTTTTTCTTGTCTTGATACTATATATAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAtt                                                      <  2:178223/134‑1 (MQ=255)
                                                                                     agttttAGGGGGTGATAAAAAGAATAAGGAAGAGGTTGTTTTTTGAAACGAGTGTGATCGAGTTTCTTCTTGTTTTGATACTATATAGAAATATCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAg                                                  <  2:167501/131‑1 (MQ=38)
                                                                                     agttttAGATGTTCATATAAAGAAGAAGGTATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAg                                                  <  1:20963/131‑1 (MQ=38)
                                                                                      ggTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgt                                                 >  1:487410/1‑134 (MQ=255)
                                                                                       gTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtg                                                >  1:61821/1‑134 (MQ=255)
                                                                                          tAGAGGGTCATAAAAGGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGttt                                             <  2:372514/134‑1 (MQ=255)
                                                                                            gagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTACCTCGCGTTTACTTAGCTGTAACTGTTGATATTACAGCGTTTaa                                           >  2:587398/1‑134 (MQ=25)
                                                                                              gggTCATAAAAAGAAGAAGGAATAGATTGTTTTTTGAGTCAAATGTGAACAAGTTTCTTCTTGTCTTGATACTATATAGAGATATATCACTCTCATATATATAGCTGGAACTGCTGATATTACAGTGTTTaaaa                                         >  2:557405/1‑133 (MQ=255)
                                                                                                gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTAGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgt                                       >  1:178955/1‑134 (MQ=255)
                                                                                                 tCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgtg                                      >  1:507179/1‑134 (MQ=255)
                                                                                                    tAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTTTATATATTGCTGTCACTGTTGCTATTACAGTGTTTCAACGTGttt                                   >  1:309499/1‑134 (MQ=38)
                                                                                                       aaaGAAGAATGAATTGTTTGTTTTTTTAAACGATTTTTAACTAGTTTCTTCTTTTCTTGATACTATATATAAATAACTCGATTTTATATATATATCTGTAACTGTTGATATTACATTGTTTAAACGTGTTTTtg                                <  2:470963/134‑1 (MQ=255)
                                                                                                       aaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                <  1:227386/134‑1 (MQ=255)
                                                                                                       aaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAAGAACTCGATTTTATATATATAGCTGTAACTGTTGATCTTACAGTGTTTAAACGTGTTTTtg                                <  1:419308/134‑1 (MQ=255)
                                                                                                        aagaagaagGAATAGGTTGTTTTTTGAAACGAGAGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTATAAGTGCTTGTATTACTGTGTTTAAACGTGTTTTtgt                               >  2:125280/1‑134 (MQ=38)
                                                                                                        aagaagaagGAATAGGTTGAAATTAGAAACGAGAGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtgt                               >  1:577313/1‑134 (MQ=39)
                                                                                                          taagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGc                             <  1:339557/133‑1 (MQ=255)
                                                                                                              aagGAATAGGTTGTTTTTTGAAATGAGTGTGAAGGAGTTTCTTCTTGTCTTGATACTATATAGAGATAAGTCGATTTTATATATATAGCTGTAACTGTTGATATGACAGTGTTTAAACGTGTTTGTGTGCGTGa                         <  2:205963/134‑1 (MQ=38)
                                                                                                                 gAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAg                      >  2:25865/1‑134 (MQ=255)
                                                                                                                  taTAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                     <  1:519729/133‑1 (MQ=255)
                                                                                                                   attggTTGTTTTTTGAAACGAGTGTTAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGa                    <  2:383563/131‑1 (MQ=255)
                                                                                                                      ggTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGaaaa                 >  1:478964/1‑134 (MQ=255)
                                                                                                                         tgttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAAttt              >  1:358689/1‑134 (MQ=255)
                                                                                                                          gttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTg             >  1:586185/1‑134 (MQ=255)
                                                                                                                          gttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATACATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTg             >  1:253828/1‑134 (MQ=255)
                                                                                                                            tttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACGCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGAc           >  1:604508/1‑134 (MQ=255)
                                                                                                                             ttttTAAACTAGTGTTTACGAGTTTCTTTTTGTTTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACa          <  1:528939/134‑1 (MQ=255)
                                                                                                                              tttGAAGCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCTATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAATGAAAATTTGACaa         <  2:51218/134‑1 (MQ=255)
                                                                                                                              tttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATCTTATATATATAGCTGTAACTGTTGCTATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAATGAAAATTTGACaa         <  2:302176/134‑1 (MQ=255)
                                                                                                                               ttGAAACGAGTGTGAACGAGTTTCTTCTTGTTTTTATACTATATAGTAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAAt        <  1:13559/134‑1 (MQ=255)
                                                                                                                                 taaaCTAATGTTAATGAGTTTCTTATTGTCTTGATACTATATAGAAATAATTCGATTTTATATATATAGCTGTAACTGTTGATATTAAAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaa      <  2:227955/133‑1 (MQ=255)
                                                                                                                                 gAAATGAGTGTGAACGAGTTTCTTCTTGTCTTGATAATATATAGAAATAACGCGAGTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaa      <  1:114667/134‑1 (MQ=255)
                                                                                                                                 gAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaa      >  1:388366/1‑134 (MQ=255)
                                                                                                                                 gAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaa      >  1:7574/1‑134 (MQ=255)
                                                                                                                                  aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaa     >  2:501166‑M1/1‑4 (MQ=255)
                                                                                                                                   aaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaa    >  2:164360‑M1/1‑3 (MQ=255)
                                                                                                                                    aCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtacaaaggattatcaaataaaaa   >  2:324638‑M1/1‑2 (MQ=255)
                                                                                                                                    aCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAATAGATTTTATATATATAGATGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGCGAATGGATATTGTGACAATtaaaa   >  1:17128/1‑134 (MQ=38)
                                                                                                                                     ctcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgagaaaaccaattaataaataaaacttactaaaaaatcaaaagaattatcaaataaaatc  >  1:593085‑M1/1‑1 (MQ=255)
                                                                                                                                     cGAGTGTGTACGAGTTTCTTCTTGTCTTGATACTATTTAGAAATTCCGCGTTTTTATATATATAGCTGTAACTGTTTATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaaaa  <  2:150819/134‑1 (MQ=255)
                                                                                                                                     cGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATTGCTGTAACTGTTGATATTACAGTATTTAAACAAGTTTATGAGAGTGAAAGAAAAATTTGACAATaaaaaa  >  1:148972/1‑134 (MQ=255)
                                                                                                                                     cGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaaaa  >  2:445673/1‑134 (MQ=255)
                                                                                                                                     |                                                                                                                                     
ATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAA  >  NC_012417/2804‑3070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.