New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 1974918 (1.030)8 (0.010) 3/258 59.3 0.95% intergenic (+207/+119) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
?NC_012417 = 2041 815 (1.000)intergenic (+274/+52) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 114 total aligned reads displayed.

TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1824‑1974
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacccttaacAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGA  <  NC_012417/2041‑1902
                                                                                                                                                                                                                                                                                                         
tctTATTGGGGTTGTTGCTTAATTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑G                                                                                                                                                        <  2:115153/138‑1
TCCTGTTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAATAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑G                                                                                                                                                        >  1:157733/1‑141
TCCTATTGGTGTTTTTGATTACTATTTGTTTTTCTATAACGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑G                                                                                                                                                        <  1:157882/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAGGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑G                                                                                                                                                        <  2:284650/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAACTGGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑G                                                                                                                                                        >  1:96944/1‑141
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCTGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑G                                                                                                                                                        >  2:136766/1‑141
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑G                                                                                                                                                        >  1:328452/1‑141
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑G                                                                                                                                                        >  2:131513/1‑141
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑G                                                                                                                                                        >  1:114492/1‑141
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑G                                                                                                                                                        >  1:277560/1‑141
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑G                                                                                                                                                        <  1:267341/141‑1
TCCTATTGGTGTTGTTGCTTACTTTTTGGTTTTCTATAAAGATGATGGTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑G                                                                                                                                                        <  1:310966/141‑1
TCCTAGTGGTGTTGTTGCTTACTTTTTTTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑G                                                                                                                                                        <  1:325921/141‑1
 taTATTTGTGTTGTTGCAGACTTTTTTGTTTTCTATAAAGATGATGTTTTTGACGAGATGGAAGATAAATATGAGTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GA                                                                                                                                                       <  2:4918/139‑1
  CTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATATAGATGATGCTTTTGACGAGATTGAAGTAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATTCTGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑Gtt                                                                                                                                                      >  2:133231/1‑139
  CTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAA                                                                                                                                                      >  1:108098/1‑141
  CTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAA                                                                                                                                                      >  1:207506/1‑141
   TATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAATATGATGCTTTTGACGAGATGGATGATAAATATGATTATCATGAAGATAATAAAAAATATACGCTGCATTTATGCCGAGAAAATTTATTTATATTTAG‑‑‑AA‑‑‑GCAC                                                                                                                                                     >  2:52206/1‑141
   TATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATACCTAGAAAATTTATTGATGTTAAG‑‑‑AA‑‑‑AAAa                                                                                                                                                     >  1:139303/1‑140
    ATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACC                                                                                                                                                    <  1:101902/141‑1
     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGCTGCTGCTTTTGACGAGATGTAAGAAAAATATGATTATCATGAAGATAATAACAAATAGACGACGCATTTATGCCGTTCAAACTTATTGATGTTTAG‑‑‑AA‑‑‑GAACgc                                                                                                                                                   >  2:126166/1‑139
     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCC                                                                                                                                                   <  1:139000/141‑1
     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCC                                                                                                                                                   >  1:221012/1‑141
     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCC                                                                                                                                                   <  2:264879/141‑1
     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCC                                                                                                                                                   <  1:251374/141‑1
     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGAAGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCC                                                                                                                                                   <  2:53243/141‑1
      tgtTGTTGTTGCTTACTTTTTGTTTTTCTATAAACGTGCCGCCCAGAACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCT                                                                                                                                                  <  2:342502/138‑1
      taGTGTTGTTGCTTACTTTTCGTTTTTCTATACAGATGATGCTTTTGCCGAGATGGAAGAAAAATATGATTATCATGAATATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCT                                                                                                                                                  <  1:74117/139‑1
      TGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGGTGATAGAAAAATATGATTATCAGGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCT                                                                                                                                                  <  1:243061/141‑1
      TGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCT                                                                                                                                                  <  1:25520/141‑1
      TGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGAAGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCT                                                                                                                                                  <  2:337673/141‑1
      TGGTGTTGATGCTTACTTCTTGTTTTTCGATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCT                                                                                                                                                  <  1:5349/141‑1
       ggtttaGTTGTTTACTTTTTGTTTTTCTATAAAGATGATTCTATTGACGAGATGGAAGAAAAATATGATCATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTT                                                                                                                                                 <  1:191168/135‑1
        GTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTA                                                                                                                                                >  2:334434/1‑141
        GTGTTGGTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTA                                                                                                                                                <  2:138649/141‑1
         gGTTGGTGCTTAATTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAA                                                                                                                                               <  1:42217/140‑1
         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAA                                                                                                                                               <  1:247186/141‑1
         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAA                                                                                                                                               <  2:36227/141‑1
         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAA                                                                                                                                               <  2:202537/141‑1
         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAA                                                                                                                                               <  2:300657/141‑1
         TGTTGTTGATTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAA                                                                                                                                               <  1:265484/141‑1
          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAACACATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAAC                                                                                                                                              <  1:168162/141‑1
          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAAC                                                                                                                                              <  1:205623/141‑1
          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAAC                                                                                                                                              <  1:258306/141‑1
          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAAC                                                                                                                                              >  2:257529/1‑141
          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAAC                                                                                                                                              <  2:292986/141‑1
            TGTTGCTTACTTTTTGTTTTTCTATAAATATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATTAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAccta                                                                                                                                            >  2:41920/1‑137
                                                              AAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCT                                                                                                                                                  >  2:207095/1‑85
                                                              AAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCT                                                                                                                                                  <  1:207095/85‑1
                                                                            TATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTT                                                                            <  1:338484/141‑1
                                                                             ATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTA                                                                           <  2:118705/141‑1
                                                                              TCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGACGTTGAGCCTCG‑‑‑GGACCCTTAACAATCCCAAAACTTGTTGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTT                                                                             >  2:226106/1‑141
                                                                                 aGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTA                                                                       <  2:61651/140‑1
                                                                                 TGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTA                                                                       <  1:68402/141‑1
                                                                                         ATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGACGTTGAGCCTCG‑‑‑GAACCCTTAACAATCCCAAAACTTATCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACCTTCGTCTGCAAGTTTAGCTAAGGGT                                                                  >  2:169688/1‑141
                                                                                                 TAGACGACGCATTTATGCCGAGAAAATTTATTGACGTTGAG‑‑‑CCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCA                                                          <  1:136846/141‑1
                                                                                                                                               tctaAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTT               <  1:175594/137‑1
                                                                                                                                               tcgtAACCCTTAACAATCCTTAAACTTGTCGAATGGTCGGCTTAATAGCTCTCGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTT               <  2:198113/137‑1
                                                                                                                                                cggcACCCTTAACCATCCCACAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGTCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCCACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTA              <  2:262681/137‑1
                                                                                                                                                 ggataCCTTAACAATCTCAAAGCTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTAT             <  2:205236/136‑1
                                                                                                                                                 gcAACCCTTAACAATCCCAACACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTAT             <  2:291400/139‑1
                                                                                                                                                  GAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATT            >  1:310466/1‑141
                                                                                                                                                  GAACCCTTAACAAGTCCAAAACGTGGCGAATGGTCGGCTTAATAGCTCACGCTAGGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATT            <  2:303935/141‑1
                                                                                                                                                   aaaCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTA           <  1:176091/138‑1
                                                                                                                                                   AACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTA           <  1:327181/141‑1
                                                                                                                                                   AACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTA           <  1:353132/141‑1
                                                                                                                                                   AACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTA           <  1:46801/141‑1
                                                                                                                                                    actCTTAACAATCCCAAAACTTGTCGAATGGTTGGCTTAATAGCTCACGCTATGCCGACATTTGTCTGCATGTTTAGTTAAGGGTTCTTCTCTACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTAT          <  2:23279/138‑1
                                                                                                                                                    ACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACCTCAATAAATTTTCTCGGCATAAATGCGACGTCTATTCTTTATTAT          >  2:139564/1‑141
                                                                                                                                                    ACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCTGCATAAATGCGTCATCTATTTTTTATTAT          >  2:297440/1‑141
                                                                                                                                                    ACCCTTAACAAACCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCTAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTAT          <  1:188920/141‑1
                                                                                                                                                     CCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCACTAAATTTTTTCGGCATAAATGCGTCGTCTATTTTTTATTATC         >  2:107347/1‑141
                                                                                                                                                     CCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTCTTTTTTATTATC         >  2:54612/1‑141
                                                                                                                                                     CCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATC         >  2:205322/1‑141
                                                                                                                                                     CCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATC         >  2:14655/1‑141
                                                                                                                                                     CCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTGTTTATTATt         >  1:116083/1‑140
                                                                                                                                                      CCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT        <  1:263188/141‑1
                                                                                                                                                      CCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT        <  1:3796/141‑1
                                                                                                                                                      CCTTAACAACCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT        <  1:45494/141‑1
                                                                                                                                                       CTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCCATAAATTTTCTCGGCAGAAATGCGTCGTCTATTTTTTATTATCTT       <  1:244323/141‑1
                                                                                                                                                       CTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT       >  2:35276/1‑141
                                                                                                                                                       CTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT       <  1:23090/141‑1
                                                                                                                                                       CTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT       <  1:211743/141‑1
                                                                                                                                                        TTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACCTTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGCCATAAAGGCTCCCTCTATTTTTTATTATCctt      >  2:260530/1‑138
                                                                                                                                                        TTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTC      <  1:240731/141‑1
                                                                                                                                                        TTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTC      >  1:201548/1‑141
                                                                                                                                                        TTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTC      <  1:253014/141‑1
                                                                                                                                                        TTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTC      <  2:181506/141‑1
                                                                                                                                                        TTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTAATTATCTTt      >  2:37551/1‑140
                                                                                                                                                        TTAACAATACAACAACTTTTCAATTGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTC      >  2:129766/1‑141
                                                                                                                                                         TAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCAGGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCA     <  2:311226/141‑1
                                                                                                                                                         TAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATTCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCA     <  2:250152/141‑1
                                                                                                                                                          AACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCACGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCAT    >  1:161331/1‑141
                                                                                                                                                          AACAATCCCAAAACTGGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCAT    <  1:289852/141‑1
                                                                                                                                                           ACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATG   >  1:321003/1‑141
                                                                                                                                                            CAATCCCAAAGCTTGTCAAATGGTCGGATTAATAGGTCACGCTATGCCGACATTCGTTTGCAAGTTTAGTTAAGGGTTCTTCTCAACATTAATAAATTTTCTCGGGATAAATGCGTCGTCTATTTTTTATTATCTTCATGA  <  2:33259/141‑1
                                                                                                                                                            CAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATTCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTCTTTTTTATTATCTTCATGt  >  1:197064/1‑140
                                                                                                                                                            CAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGTCATAATTGCCACGTCTCTTTTTTATTATCTTCATGA  >  2:56919/1‑141
                                                                                                                                                            CAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGA  >  1:139234/1‑141
                                                                                                                                                            CAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGA  >  2:111980/1‑141
                                                                                                                                                                                                                                                                                                         
TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAG‑‑‑AA‑‑‑GAACCCTTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1824‑1974
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacccttaacAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGA  <  NC_012417/2041‑1902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.