New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 1954877 (0.990)7 (0.010) 3/264 60.0 0.84% intergenic (+187/+139) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
?NC_012417 = 2064 826 (0.990)intergenic (+297/+29) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 885 total aligned reads displayed.

GTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCT  >  NC_012417/1814‑2094
                                                                                                                                            |                                                                                                                                            
gTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGGTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGa                                                                                                                                              <  1:296125/141‑1 (MQ=255)
   tttttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGt                                                                                                                                           >  1:106033/1‑141 (MQ=255)
   tttttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGt                                                                                                                                           >  1:18338/1‑141 (MQ=255)
     tttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGCTGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAGAAAATAGACGACGCATTTATGCCGAGAAAATTTATTTAttttt                                                                                                                                         >  2:260912/1‑140 (MQ=255)
      ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTga                                                                                                                                        <  1:100777/141‑1 (MQ=255)
          tcttATTGGGGTTGTTGCTTAATTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                                    <  2:115153/138‑1 (MQ=255)
                   tgttgtTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTaa                                                                                                                           <  2:300657/141‑1 (MQ=255)
                   tgttgtTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTaa                                                                                                                           <  2:202537/141‑1 (MQ=255)
                    gttgttGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                                          <  2:292986/141‑1 (MQ=255)
                    gttgttGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                                          <  1:220509/141‑1 (MQ=255)
                     ttgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAACATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACt                                                                                                                         >  2:185306/1‑141 (MQ=255)
                     ttgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAAATGTAATAAAAATATGATTATCATGAAAATAATAAAAAATAGACGACGCATTTATTCCTAGAAAATTTATTGATGTTGAGAAGAACCCTTAACt                                                                                                                         <  2:143827/141‑1 (MQ=38)
                      tgttgCTTACTTTTTGTTTTTCTATAAATATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATTAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTACCTa                                                                                                                        >  2:41920/1‑141 (MQ=255)
                       gttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                                       >  1:76518/1‑141 (MQ=255)
                       gttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                                       <  1:95096/141‑1 (MQ=255)
                       gttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                                       >  1:160748/1‑141 (MQ=255)
                       gttgCTTACTTTTTGTTTTTCTAAAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                                       >  1:151744/1‑141 (MQ=255)
                         tgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGACAAGAACCCTTAATTaaaa                                                                                                                     >  2:313554/1‑140 (MQ=255)
                           cTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGGTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACTCTTAACTAAACtt                                                                                                                   >  1:42077/1‑141 (MQ=255)
                           cTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGATGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACACTTTACTAAACtt                                                                                                                   >  2:335036/1‑141 (MQ=255)
                           cTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACtt                                                                                                                   >  1:179396/1‑141 (MQ=255)
                              aCTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAATAAACTTGCa                                                                                                                >  2:272414/1‑141 (MQ=255)
                               cTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAg                                                                                                               <  2:138825/141‑1 (MQ=255)
                               cTTTGTGGTTTCTTATAAAGATGATGCTTTTGACGATATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAGTAGACGTCGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAg                                                                                                               <  2:90190/141‑1 (MQ=37)
                               atatttGTTTTTCTATAAAGATGATGTTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAg                                                                                                               <  2:217601/138‑1 (MQ=255)
                                tttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                              <  1:310421/141‑1 (MQ=255)
                                tttttGGTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                              <  1:226238/141‑1 (MQ=255)
                                ttattGTGTTTTTATAAAGATGATGCGTTTGACGAGATGGAAGAAAAATATGGTTAGAATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                              <  2:266399/138‑1 (MQ=25)
                                 ttttGTTTTTCTATAAAGATGGTGTTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAc                                                                                                             <  2:341/141‑1 (MQ=255)
                                   ttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGa                                                                                                           >  1:108421/1‑141 (MQ=255)
                                    tGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTCAACTTGCAGACGaa                                                                                                          >  1:327202/1‑141 (MQ=255)
                                    tGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGaa                                                                                                          <  1:35788/141‑1 (MQ=255)
                                     gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAt                                                                                                         >  1:252762/1‑141 (MQ=255)
                                      tttttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGACAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATg                                                                                                        >  2:242066/1‑141 (MQ=255)
                                         ttCTATAAAGATGATGCTTTTGACGAGCTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTCTCCTTGCAGACTAATCTCg                                                                                                     >  2:211192/1‑141 (MQ=37)
                                         ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCg                                                                                                     >  1:142114/1‑141 (MQ=255)
                                             gtaAAGATGATGCTTTTGACCAGATTGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGACTATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                                 <  1:277232/140‑1 (MQ=255)
                                             ataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTAATGTTGTGCAGTACCGTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                                 >  1:65853/1‑141 (MQ=37)
                                             ataAAGATGATGCGTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                                 <  2:101923/141‑1 (MQ=255)
                                             agaaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                                 <  1:129890/139‑1 (MQ=255)
                                                aaGATGATACTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                              <  1:137168/141‑1 (MQ=255)
                                                 aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCg                                                                                             <  1:318227/141‑1 (MQ=255)
                                                    tgatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGa                                                                                          <  1:301191/141‑1 (MQ=255)
                                                      atgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                                        <  1:342597/141‑1 (MQ=255)
                                                         cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                                     <  2:131855/141‑1 (MQ=255)
                                                         cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGACATAGCGTGAGCTAt                                                                                     >  2:169625/1‑141 (MQ=255)
                                                          ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACTAATGTCGGCATACCGTGTGCTAtt                                                                                    >  2:1737/1‑141 (MQ=255)
                                                          ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAtt                                                                                    <  1:146784/141‑1 (MQ=255)
                                                           tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACCAATGTCGACATAGCGTGAGCTAtca                                                                                   >  2:106563/1‑139 (MQ=255)
                                                           tataaCGAGATGGAAGAAAAATATGATTATCAAGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTa                                                                                   <  1:331877/137‑1 (MQ=255)
                                                              gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAACTATTAAGc                                                                                >  2:206520/1‑141 (MQ=255)
                                                                cGAGATGGAAGAAAAATATGATTATTATGAAGATAATAAAAAATAGTCGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACTCTTCACTAAACTTGCAGACGAATGTGGGCATAGCGTGAGCTATTAAGCCg                                                                              >  2:179969/1‑141 (MQ=21)
                                                                cGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAACTTATTGATGTTGAGAAGAACCCTTAACTAAACTTCCAGACGAATGACAGCACAGCCTGAGCTATTAAGCCg                                                                              >  2:57833/1‑141 (MQ=21)
                                                                 gagaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACt                                                                                                                         <  1:207319/97‑1 (MQ=255)
                                                                   gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAcc                                                                           >  1:175019/1‑141 (MQ=255)
                                                                   gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAcc                                                                           >  1:113651/1‑141 (MQ=255)
                                                                         agaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                                     <  1:20451/141‑1 (MQ=255)
                                                                         agaaAAATATAATTATCAGGAAGATAATAAAAAATAGACGACGCATTTATGCAGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                                     <  2:28544/141‑1 (MQ=255)
                                                                          gaaAAATATGATTATCATGAAGATAATAAACCATCGCAGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGAAGACAAATGTAAGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                    >  2:197052/1‑141 (MQ=17)
                                                                          aaaaaaTATGATTTGTAAGAATATAAGAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                    <  2:192/140‑1 (MQ=17)
                                                                          aaaaaaTATGATTATCATGAACATAATAAAAAATAGACAACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAAGAATGTCGGCATAGCGTGAGCTATTAAGACGACCATTCGAc                                                                    <  1:117294/140‑1 (MQ=255)
                                                                             aaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAg                                                                 >  2:281231/1‑141 (MQ=255)
                                                                              aaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                                <  1:239993/141‑1 (MQ=255)
                                                                               atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                               >  1:322912/1‑141 (MQ=255)
                                                                                tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                              <  1:337247/141‑1 (MQ=255)
                                                                                tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCATTACATCCATTTGCAGACGAATCTAGGCATAGCGTGAGCTATTAAGCCGCCCAGTTGACAAGttt                                                              >  1:166415/1‑141 (MQ=18)
                                                                                 atGATTATCATGAAGATAATAAACAATAGCTAGCTCATTTCTGCCGACCATAAGTACTTATGTTGAGAAGAACACTTAACTATACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                             <  1:257529/141‑1 (MQ=14)
                                                                                 atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                             <  1:262338/141‑1 (MQ=255)
                                                                                 atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                             <  1:232761/141‑1 (MQ=255)
                                                                                 atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                             <  1:282969/141‑1 (MQ=255)
                                                                                 atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAACATTCGACAAGattt                                                             >  2:258937/1‑141 (MQ=255)
                                                                                  tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATCAAGCCGACCATTCGACAAGTTTTg                                                            >  2:329643/1‑141 (MQ=255)
                                                                                    aTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTggg                                                          >  2:53137/1‑141 (MQ=255)
                                                                                    aTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTCGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTggg                                                          <  1:7346/141‑1 (MQ=255)
                                                                                      tATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAt                                                        <  2:34857/141‑1 (MQ=255)
                                                                                       aTCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTCCGCATGATTGCGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAtt                                                       >  1:350743/1‑141 (MQ=17)
                                                                                       aTCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAtt                                                       <  2:70514/141‑1 (MQ=255)
                                                                                             aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAg                                                 <  2:35276/141‑1 (MQ=255)
                                                                                                   ataaAAAATAGACGACGCCTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACACTAAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                                           >  2:161372/1‑141 (MQ=255)
                                                                                                   ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                                           >  1:267684/1‑141 (MQ=255)
                                                                                                    taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                                          <  1:244267/141‑1 (MQ=255)
                                                                                                     aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCgg                                         >  1:21358/1‑140 (MQ=255)
                                                                                                     aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGa                                         >  1:8981/1‑141 (MQ=255)
                                                                                                      agaaaTATACGACGCATTTATGCCGAGAAAATTGATTGATGTTGTGAAGAACCCTTAACTAAACTTGCAGACGAATGAAGCAATTGCTGGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAg                                        <  2:4954/139‑1 (MQ=11)
                                                                                                      aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAg                                        >  2:232048/1‑141 (MQ=40)
                                                                                                      aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAg                                        <  1:193565/141‑1 (MQ=40)
                                                                                                      aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAg                                        <  1:47202/141‑1 (MQ=40)
                                                                                                         aaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCt                                     <  1:189145/141‑1 (MQ=38)
                                                                                                           tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATACCGTGAACTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCa                                   >  2:319833/1‑141 (MQ=255)
                                                                                                             taggacgCATTTATGCCGATAAAATTTATTGATGTGGAGAAGAACCCTTAACTAAACTTGCAAACGAATGTCGGCATAGCGTTATCTATAAAGCCTAACATTCGACAAGTTTTGGGATTTTTAAGGGTTCCGAGGCTCAAc                                 <  2:80186/138‑1 (MQ=11)
                                                                                                             gaagtcgCATTTATGCAGAGAAAATTTATTGATGTTCAGAAGAACCCTTAACTAAACTTGTAGACGAATGTCGGCATAGCGAGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                                 <  2:224611/136‑1 (MQ=11)
                                                                                                              acgatgCATTTATGCTGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACg                                <  2:251681/141‑1 (MQ=18)
                                                                                                              acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATCGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCACCg                                >  1:290064/1‑141 (MQ=25)
                                                                                                                    taTTTATGCGGAGAAAATTTAGTGATGTGGATAAGAACTCTTGACTAAACTTGCAGACTAATGTTGGTATAGCTGGTGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa                          <  2:235247/140‑1 (MQ=11)
                                                                                                                    cATTTATGCCGAGAAAATTTATTGATTTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGTGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa                          <  2:75675/141‑1 (MQ=17)
                                                                                                                    cATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa                          >  2:15086/1‑141 (MQ=32)
                                                                                                                      tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCCATTAAGCCGACCATTCGACAAGTTATGGGATTGTTAAGGGTGCCGAGGCCCAACGTCAATaaa                        >  2:126222/1‑141 (MQ=255)
                                                                                                                         aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCa                     >  1:199202/1‑141 (MQ=32)
                                                                                                                           gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTTACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt                   <  1:56013/141‑1 (MQ=17)
                                                                                                                                        aTTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGt      >  1:84325/1‑141 (MQ=32)
                                                                                                                                            |                                                                                                                                            
GTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCT  >  NC_012417/1814‑2094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.