BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 4419	88 (0.930)	7 (0.020)	3/264	12.1	1.5%	intergenic (+384/‑81)	USA300HOU_pUSA300HOUMR0006/cadR	hypothetical protein/cadmium binding protein
*	?	NC_012417	= 1946	847 (1.010)	7 (0.020)	3/264	12.1	1.5%	intergenic (+179/+147)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 917 total aligned reads displayed.

TTCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAA  >  NC_012417/1806‑2082

 tCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAt                                                                                                                                         >  1:304749/1‑141 (MQ=255)

 tCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATACTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAt                                                                                                                                         <  1:46574/141‑1 (MQ=255)

   acacTGTTTTTTTATTCCTATTGTTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAttt                                                                                                                                       <  1:36365/141‑1 (MQ=255)

    aattGTTTTTTTATTCCTATTGGTGTGGTGTCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGTAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTa                                                                                                                                      <  2:150842/138‑1 (MQ=255)

     acTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTAt                                                                                                                                     <  1:87736/141‑1 (MQ=255)

     acTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTAt                                                                                                                                     <  1:234494/141‑1 (MQ=255)

       tGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGTCGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTg                                                                                                                                   >  2:296997/1‑141 (MQ=255)

        gTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTAGATATAGTATGGATATGATGATTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGa                                                                                                                                  <  1:241695/141‑1 (MQ=255)

            ttttATTCCTATTTGTATTGTTGCTTACTTTTTGTTTTTCTATAAGGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGCAAATTTATTGATGtt                                                                                                                              <  2:218535/141‑1 (MQ=255)

            ttttATTCCTATTGTTGTTGTTGTTTACTTTTTGTTTTTTTATAAAGATGATGAGTTTGACGAGATGAAAGAAACAACTTGTTAGCGTGTCGGCAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGtt                                                                                                                              <  2:161101/141‑1 (MQ=255)

            ttttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGtt                                                                                                                              >  1:322987/1‑141 (MQ=255)

            ttttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGtt                                                                                                                              >  1:138825/1‑141 (MQ=255)

            ttttATTCCTATTGGTGTTGTGGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAACAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGtt                                                                                                                              >  1:6339/1‑141 (MQ=255)

             tttATTCTTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTg                                                                                                                             <  1:293430/141‑1 (MQ=255)

             tttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTg                                                                                                                             >  2:244267/1‑141 (MQ=255)

              ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTga                                                                                                                            <  1:100777/141‑1 (MQ=255)

               tATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                           >  1:199253/1‑141 (MQ=255)

                  tCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAGGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                        <  2:284650/141‑1 (MQ=255)

                  tCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCTGAGAAAATTTATTGATGTTGagaag                                                                                                                        >  2:136766/1‑141 (MQ=255)

                       ttGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGAAGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAAccc                                                                                                                   <  2:53243/141‑1 (MQ=255)

                        tgttgttgtTGCTTACTTTTTGTTTTTCTATAAACGTGCCGCCCAGAACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCt                                                                                                                  <  2:342502/138‑1 (MQ=37)

                        tGGTGTTGATGCTTACTTCTTGTTTTTCGATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCt                                                                                                                  <  1:5349/141‑1 (MQ=255)

                           tgttgtTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTaa                                                                                                               <  2:36227/141‑1 (MQ=255)

                           tgttgtTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTaa                                                                                                               <  1:247186/141‑1 (MQ=255)

                            gttgttGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                              <  1:205623/141‑1 (MQ=255)

                             ttgttgCTTACTTTTTTTTTTTTTTTTAAGATGATGCTTTTGACGAGATTGAAGAATAATATGTTTATCATTAAGATAATAATATATAGACGACTCATTTATGCTGAGAAAATTTATTTTTTTTGTTTTGAACCCTTAACt                                                                                                             >  2:101092/1‑141 (MQ=255)

                             ttgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAACATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACt                                                                                                             >  2:185306/1‑141 (MQ=255)

                             ttgttgCTTACTTTTTGTTTTTCTATAAAGATGATGATTTTGACGCGATGGAAGAAAAATATGATTATCATGAAGATAATAAAACATAGACGACGCATGTATGCCGCGAAAATTTATTGATGTTGACAAGAACCCTTAACt                                                                                                             >  1:159691/1‑141 (MQ=255)

                              tgttgGTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGATCCCTTAACTa                                                                                                            <  1:318273/141‑1 (MQ=255)

                              tgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTa                                                                                                            >  1:179544/1‑141 (MQ=255)

                               gttgCTTACTTTTTGTTTTTCTAAAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                           >  1:151744/1‑141 (MQ=255)

                                ttgCTTACTTTTTTTTTTTTTTTTAATATGATGCTTTTGACGAGATTTATGAAAATTATGATTATTATGAAGATAATAAATATTAGACGACGCATTTATGCCGAGAATATTTATTTTTGTTTTTAAGATCCTTTAACTaaa                                                                                                          >  2:256097/1‑141 (MQ=255)

                                   cTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGGTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACTCTTAACTAAACtt                                                                                                       >  1:42077/1‑141 (MQ=255)

                                      aCTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGATGTAAAATATGATTATCATTATGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTTCa                                                                                                    >  2:201837/1‑141 (MQ=37)

                                        tttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                  >  1:218482/1‑141 (MQ=255)

                                         ttttGGTTTTCTATAAAAATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAc                                                                                                 <  2:336879/141‑1 (MQ=255)

                                            tGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGaa                                                                                              >  1:109610/1‑141 (MQ=255)

                                             tttttttttttAAGAAGAAGCTTTTGACGAGATGTAAGAAAAATATGATTATAATAAAGATAATATAAAATAGACGACGCATTTTTTTCTTTTTATTTTATTTATGTTGATAATAACCCTTAACTAAACTTGCAGACGAAt                                                                                             >  2:59497/2‑141 (MQ=16)

                                               ttttCTATAAATATGATGCTTTTGACGAGATGGAAGTAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATTCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTATACTTGCATACGAAttt                                                                                           >  2:106138/1‑139 (MQ=37)

                                                 ttCTATAAATATGAGGCTTGCGACAAGATGGAAGAAAAATATGATGATCATGAAGATACTAAAAAATAGACTACGCATTTATGCCTAGAAAATTTATGGATGTTGAGAAGAACCCTTAACTAAACTTGCAGTCGAATGTCg                                                                                         <  1:194548/141‑1 (MQ=21)

                                                 ttCTATAAAGATGATGCTTTTGACGAGCTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTCTCCTTGCAGACTAATCTCg                                                                                         >  2:211192/1‑141 (MQ=37)

                                                 ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTGACGTAAACGTGCAGACGTATGTCg                                                                                         >  2:191454/1‑141 (MQ=37)

                                                     agaaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                     <  1:129890/139‑1 (MQ=255)

                                                      taAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                    <  1:106445/141‑1 (MQ=255)

                                                      taAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATATTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                    >  2:260132/1‑141 (MQ=255)

                                                        aaGATGATGTTTTTGAAGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                  <  2:225353/141‑1 (MQ=255)

                                                        aaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTACCTAAACTTACAGACGAATGTCATCATaac                                                                                  >  2:239213/1‑139 (MQ=255)

                                                        aaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                  >  1:286686/1‑141 (MQ=255)

                                                         aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCGTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGcc                                                                                 >  1:253335/1‑140 (MQ=255)

                                                             gatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGTCGCATTTATGCAGCGCTTTTTTTTCAATTTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCTTGaa                                                                             >  1:350825/1‑140 (MQ=25)

                                                              atgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                            <  1:25884/141‑1 (MQ=255)

                                                               tgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCt                                                                           >  1:332001/1‑141 (MQ=255)

                                                                 cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                         >  1:312505/1‑141 (MQ=255)

                                                                   tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTa                                                                       >  2:131277/1‑141 (MQ=255)

                                                                   tttGACGAGATGGAAGAAAAATATGATTATCACGAAGATAATAAAAAATAGAAGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTACACTTGCAGACGAATGTCGACATAGCGTCACATATTa                                                                       >  2:43363/1‑141 (MQ=21)

                                                                      gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                    >  1:327442/1‑141 (MQ=255)

                                                                      gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAACTATTAAGc                                                                    >  2:206520/1‑141 (MQ=255)

                                                                              ggAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAtt                                                            >  1:71356/1‑141 (MQ=255)

                                                                               gaagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAAACCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTc                                                           >  1:230489/1‑141 (MQ=255)

                                                                                 agaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                         <  2:26458/141‑1 (MQ=255)

                                                                                 agaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                         >  2:350340/1‑141 (MQ=255)

                                                                                   aaaaaTATAATTAACATGAAGATAATAAAAAATAGACGACGCATTTATGCCGGGTTGTGATGAGAAGATGGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACa                                                       <  1:82060/141‑1 (MQ=17)

                                                                                      aaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                    <  1:14750/141‑1 (MQ=255)

                                                                                      aaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                    <  1:297774/141‑1 (MQ=255)

                                                                                        tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                  >  2:167194/1‑141 (MQ=255)

                                                                                        tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCATTACATCCATTTGCAGACGAATCTAGGCATAGCGTGAGCTATTAAGCCGCCCAGTTGACAAGttt                                                  >  1:166415/1‑141 (MQ=18)

                                                                                         ttGATTAGTATAAAGAGAAAAAACAATAGTCGACGCATTTATGGCGAGAAAATTTATTGATGTTGAGAAGAACCTTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                 <  2:173468/140‑1 (MQ=14)

                                                                                            aTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTggg                                              <  1:189246/141‑1 (MQ=255)

                                                                                             ttATGATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGa                                             <  2:270662/141‑1 (MQ=255)

                                                                                                tCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTg                                          <  2:111980/141‑1 (MQ=255)

                                                                                                      aGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAgg                                    >  1:263188/1‑141 (MQ=255)

                                                                                                           ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                               <  1:338962/141‑1 (MQ=255)

                                                                                                             aaaaaaTAGACGAGGGATTGATGTCGAGAAAATTTATTGATGTTGAGAAGAACCCTGAACTAAACGTGCAGACGAATGTCGGCATAGCGGGAGCTATTAAGCCGACCATTCGTCAAGTTTTTGGATTGTTAAGGGTTCCGa                             <  1:143600/141‑1 (MQ=14)

                                                                                                             aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGtttaga                             >  1:175594/1‑137 (MQ=255)

                                                                                                              aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTACGaa                            >  1:27861/1‑140 (MQ=255)

                                                                                                               aaaaTAGACTACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAGGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                           <  2:49921/141‑1 (MQ=255)

                                                                                                               aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                           <  1:185473/141‑1 (MQ=40)

                                                                                                                aaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc                          <  1:113889/141‑1 (MQ=38)

                                                                                                                aaaTAGACGACGAATTTATGCGGTTGAAAATTATTTATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc                          <  2:304631/141‑1 (MQ=11)

                                                                                                                 aaTAGACGACGCATTTATTCCGATAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACGTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCt                         <  2:19682/141‑1 (MQ=255)

                                                                                                                    aGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGCCAAGTTTTGGGATTGTTAAGCGTTCCGAGGCTCaa                      >  2:178386/1‑141 (MQ=255)

                                                                                                                     taggacgCATTTATGCCGATAAAATTTATTGATGTGGAGAAGAACCCTTAACTAAACTTGCAAACGAATGTCGGCATAGCGTTATCTATAAAGCCTAACATTCGACAAGTTTTGGGATTTTTAAGGGTTCCGAGGCTCAAc                     <  2:80186/138‑1 (MQ=11)

                                                                                                                     gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                     >  1:11820/1‑141 (MQ=35)

                                                                                                                     gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                     >  1:26912/1‑141 (MQ=35)

                                                                                                                        gacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTc                  <  2:121980/141‑1 (MQ=32)

                                                                                                                            cATTTATGCCGAGAAAATTTATTGATTTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGTGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa              <  2:75675/141‑1 (MQ=17)

                                                                                                                            cATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa              <  2:332001/141‑1 (MQ=32)

                                                                                                                            cATTTATGCAGAGAAAAGTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAGTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa              <  2:70749/141‑1 (MQ=12)

                                                                                                                             aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa             >  2:315132/1‑141 (MQ=32)

                                                                                                                                   gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt       <  1:207530/141‑1 (MQ=32)

                                                                                                                                   gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt       >  1:346946/1‑141 (MQ=32)

                                                                                                                                    ccGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCAGAGGCTCAACGTCAATAAAGCCAta      >  2:288831/1‑140 (MQ=17)

                                                                                                                                    ccGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGAATAGCGTGAGCTATTAAGCCGAACATTCGACAAGTTTTGGGATTGTTAAGGAATACGAGGCTCAACGTCAATAAAGCAAtt      >  2:322769/1‑141 (MQ=11)

                                                                                                                                    acGAGAAAATTTATTGATGTGAAGAAGAACCTTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAtt      <  2:142973/140‑1 (MQ=12)

                                                                                                                                     cGAGAAAATTTATTGATGTTGAGAAGAACCCTTGACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTg     <  2:232690/141‑1 (MQ=17)

                                                                                                                                      gagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTGGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCCATAACGCAACTgg    >  2:280615/1‑141 (MQ=255)

                                                                                                                                      gagaAAATGTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTgg    <  1:222253/141‑1 (MQ=17)

                                                                                                                                       agaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGa   <  1:93595/141‑1 (MQ=31)

                                                                                                                                       agaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGa   <  2:8981/141‑1 (MQ=31)

                                                                                                                                        gaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGaa  <  1:76261/141‑1 (MQ=11)

TTCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAA  >  NC_012417/1806‑2082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.