| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2085296 = | 24 (0.790) | 25 (0.910) | 20/252 | 0.3 | 54.6% | coding (173/201 nt) | hlb_1 | Phospholipase C |
| ? | USA300TCH1516_ALE | = 2128343 | 20 (0.730) | coding (1/825 nt) | hlb_2 | Phospholipase C | |||||
CTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAA > USA300TCH1516_ALE/2128204‑2128480 | cTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAt < 2:230083‑M2/141‑2 (MQ=255) cGTGTATTCTCATTTGTTAGAAGAAAAATTTAATAAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACACATTAGGAACTCCAAACCAAATAAATACTGTTCTTACAAGGTTTATAtctatcta < 2:339733‑M2/141‑9 (MQ=255) aTTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGAGACTCCAAACACAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactg < 2:244543‑M2/141‑14 (MQ=255) tGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAata < 1:188606/141‑1 (MQ=255) gTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagactttta < 1:119675‑M2/141‑24 (MQ=255) gTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAatat > 1:212264/1‑141 (MQ=255) agaagaAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaaca > 1:230083‑M2/1‑115 (MQ=255) ataaaaattAAATGAAGAAGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataa > 2:282688‑M2/3‑112 (MQ=255) gaaAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaa > 1:213441‑M2/1‑111 (MQ=255) aaaTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTg < 1:247587/141‑1 (MQ=255) aTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAt < 1:160795/141‑1 (MQ=255) tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGTCAATATAAACGCGCTGAtt > 1:198200/1‑141 (MQ=255) tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGATTCTAtgtatccaaactggaaacttttaacataaaattact < 2:80461‑M2/141‑37 (MQ=255) gtgAAGAGGGCAAAAAAACAACGAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatc > 1:169584‑M2/2‑101 (MQ=255) aaagGAAAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGa < 2:340130/139‑1 (MQ=255) aCAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTCTAAGTCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtc > 2:251194/1‑141 (MQ=255) cAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaag > 1:130525‑M2/1‑91 (MQ=255) aaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATcttctt > 2:187981/1‑141 (MQ=255) aaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaa < 1:269652‑M2/141‑56 (MQ=255) aaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGCGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCttatta > 2:161401/1‑141 (MQ=255) acTAAAATTTTAGAAAGTATTTAATTTAGGGACCCATTAGGGACTCCAAACACAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTa < 2:170529/141‑1 (MQ=255) acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATGAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCTGACAATATTCTTATATTa > 2:246161/1‑141 (MQ=255) aatAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTa < 2:278024/139‑1 (MQ=255) aaaTTTGAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGCAGCAATATAAAAGCGCTGATTCAATCAGATAATCTTCTTATGTTcaaca > 2:270840/1‑139 (MQ=255) aaaGTTTAGAAAGTAAGTAATTTAGTGACGCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataat > 2:189599‑M2/1‑77 (MQ=255) tttAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatca > 2:258507‑M2/1‑73 (MQ=255) tttAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGAGGCAATAGCAACGCGCGTATTTAATCGAACAATCGTCTTATATTAAAaatact > 2:54688/1‑139 (MQ=255) aCCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGc > 2:93700/1‑141 (MQ=255) aCCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGc < 1:246374/141‑1 (MQ=255) tCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGt > 1:110928/1‑141 (MQ=255) aaCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataa < 2:163548‑M2/141‑109 (MQ=255) aaCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaacgtttataactttctcattatccataatacctcatataa < 2:352468‑M2/141‑109 (MQ=255) ccAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattactcatcattcaaaaagtaaaacagcataatatcacggtttataagtttatcagtatcaataatacctcatataaaat > 1:244543‑M2/1‑30 (MQ=255) ccAATAAATACTGTTGTTACAAGGTTTCTATGCATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCGTTTGATAATGGTGCAtaaa > 1:79294/1‑138 (MQ=255) caaataaataTTGTTTTTACAAGGTTTCTATGTATCCAAACTGGGTGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAg < 2:249886/139‑1 (MQ=255) aataaataCTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttctcattatcaataatacgtactataaaaaaa < 2:258264‑M2/141‑114 (MQ=255) aataaataCTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataa < 2:332660‑M2/141‑114 (MQ=255) ataaataCTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaa > 1:71364‑M2/1‑27 (MQ=255) ataaataCTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaa > 1:221148‑M2/1‑27 (MQ=255) tgttgtTACAAGGTTTCTATGTATCCAAACTGAGGACAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGACGTAATATTCAATAAAGCATTAGATAAAGATGCTACAAACAAAtaatta > 2:238422/1‑141 (MQ=255) ttACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactt < 2:239350‑M2/141‑128 (MQ=255) ttACAAGGATTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatataaatgtttataactttatcattatcaataatacatcctataaaataaaattatagggactt < 2:27115‑M2/141‑128 (MQ=255) tACAAGGTTTCTAtgtatccaaactggagactgttaacataaaattacttatcattcaaaaagtagaacagcataatatcaaggtttataacgttatcattatcaataataccgcttatcaattcagattttatggactgt < 1:160122‑M2/141‑129 (MQ=255) aCAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttt < 1:48999‑M2/141‑130 (MQ=255) cAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggacttttt < 1:145919‑M2/141‑131 (MQ=255) tttCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggattataactttatcattatcaataatacatcatataaaataaaattttagggactttttaggga < 2:176577‑M2/141‑136 (MQ=255) tCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttttttttttt < 2:31186‑M2/141‑138 (MQ=255) tCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttttagggact < 1:38570‑M2/141‑138 (MQ=255) | CTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAA > USA300TCH1516_ALE/2128204‑2128480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |