Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | USA300TCH1516_ALE | 2,532,298 | A→T | 100% | T15T (ACA→ACT) | femA_3 → | Aminoacyltransferase FemA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 2,532,298 | 0 | A | T | 100.0% | 157.9 / ‑6.5 | 50 | T15T (ACA→ACT) | femA_3 | Aminoacyltransferase FemA |
Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (17/32); minor base G (0/1); total (17/33) | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TGTGTATTTGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAGCA > USA300TCH1516_ALE/2532161‑2532433 | tgtgTATTTGTAATCAGTTTTTGATAACATAAAAAAATAGAATTCTTAATAAATTCAAAAATTACCGTGTGCGCCAGAAAGCGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCATTTactaca > 2:161108/1‑141 (MQ=255) ttGTAATCAGTTTTTAATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCAtt < 2:604494/141‑1 (MQ=255) ttGTAATCAGTTTATTATAAAATAAAAGAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATTAACTTTGTAACGTTGACTTCGGATGAGTTGAATGCGTTTACTACAAAGCAtt < 2:147288/141‑1 (MQ=255) tctAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCAttt < 1:71897/139‑1 (MQ=255) tGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCAttt < 1:13391/141‑1 (MQ=255) tGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCAttt < 1:67101/141‑1 (MQ=255) tAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCAttttt > 2:524467/1‑141 (MQ=255) tAATCAGTTTTAGCTCACATCCAATAATAGCATTAATAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCAttttt < 1:239876/141‑1 (MQ=255) aaTCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCAttcttc > 2:547396/1‑141 (MQ=255) tttttGATAAAATAGAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGTGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTa < 2:603570/141‑1 (MQ=255) ttGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTacac < 2:81047/141‑1 (MQ=255) gATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATAAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCATTTACTACACATCATTTTTCACATTacccac > 2:18333/1‑141 (MQ=255) aaaaaaaaTAGCATTATTAGTAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGc < 1:357126/140‑1 (MQ=255) aaaaaaaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGc < 1:611705/140‑1 (MQ=255) aaaaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGAATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTAt > 2:466393/1‑141 (MQ=255) aaaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTAtt > 2:362741/1‑141 (MQ=255) aaaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTAtt < 2:340714/141‑1 (MQ=255) gCATTATTAATAATTGCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTAc < 1:53765/141‑1 (MQ=255) attaATAAATGTAAAAATTATAGTTCAATTCAGAGATGGATGGGATAGAATGAATGTTGTAACGACACCCTAGTAAGAGTTCAATGCGTTTACTACAAAGTATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑Ca < 2:161273/141‑1 (MQ=255) aTTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTg < 2:16147/141‑1 (MQ=255) aagttATAGTGCAATTCAGAGAGGGATGGGATAAAATGAACTTTTTAACGTTTACTTCGGAGAAGTTCAATGCATTTACTACAAAGAATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTaa < 2:319056/138‑1 (MQ=255) ttATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAg < 1:47248/141‑1 (MQ=255) taGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCg < 1:598110/141‑1 (MQ=255) taGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCg < 2:426858/141‑1 (MQ=255) taGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCg < 1:192791/141‑1 (MQ=255) tCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGAtgt < 1:16253/141‑1 (MQ=255) aTTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCa < 1:553914/141‑1 (MQ=255) aTTCAGAGAGGGAGGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCa < 1:128274/141‑1 (MQ=255) gagagagGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCt < 2:503538/140‑1 (MQ=255) gagagGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACCAAGCATTTTTCCCATCACACACCTTCATCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGACGTTCATCTTg > 2:456241/1‑141 (MQ=255) gagagGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTAAACCTAATCAGCTATTCATT‑CAATACTTTTATGTTTTTTAAAAGGCGATGTGCATCTTg > 1:403614/1‑141 (MQ=255) agagGGATGGGATAAAATGAACTTTGTAACGAAGACCTCGAATGAGTTCAATGCGTTGAATACAAAGCATTTTTCACATAACACACAAGGAGCTATTCATTACACT‑CAGAGAGTAGATCTAAACGGCGACGCGCATCtcgg > 2:566421/1‑138 (MQ=255) gggatgggatAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAGTGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAgg < 1:280491/141‑1 (MQ=255) gggatgggatAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTGTCATGACACACAATCAGCTATTCAGTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAgg < 1:304435/141‑1 (MQ=255) atAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAg < 1:78394/141‑1 (MQ=255) tGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACa < 1:208618/141‑1 (MQ=255) tGAACTTGTTAACGTTGACTTCAGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAG‑CATAGAGCTGATTTAAAAAGCGATGTGCATCTTGTAGGGGTTAAAGATGACa < 2:293202/141‑1 (MQ=255) aCTTTGTACCGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTCGGGGATAAAGATGACAGTg > 2:443805/1‑141 (MQ=255) ttGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCCAGTGAtt > 2:335056/1‑141 (MQ=255) ttGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCACCTTGTAGGGGCTAAAGATGACAATGGTCACGTGAtt > 2:155088/1‑141 (MQ=255) aCTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCa < 2:461389/141‑1 (MQ=255) aCTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATATTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCa > 1:380646/1‑141 (MQ=255) aTGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCt < 1:588725/141‑1 (MQ=255) aaTGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACa < 1:362741/141‑1 (MQ=255) aaTGCGTTTACTACAAAGCATTTCCCACATTAGACACAAGCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACa > 1:442684/1‑141 (MQ=255) aTGCGTTTACTACAAAGCATTTTTCACATTACAAACAATCAGATATTCAGTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAg < 1:602833/141‑1 (MQ=255) gccGTTTATGACAAAGCGTTGTTCTGATTAGACAGAAGCAGCTATTCGTTGCAAT‑CATAGAGTTGATTTAAAAGGCGGTGTGCATCTTGGGGAGGTGAAAGATGAGAATGGACAAGTGACTGCAGGATGCTTATTGACAGa < 2:129572/139‑1 (MQ=255) gTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAgc > 1:455046/1‑141 (MQ=255) gTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATCTGCATAATTTAGGGGTGAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAgc > 1:467649/1‑141 (MQ=255) tttACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAgca > 2:443480/1‑141 (MQ=255) tttACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAgca > 2:139466/1‑141 (MQ=255) | TGTGTATTTGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAAT‑CATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAGCA > USA300TCH1516_ALE/2532161‑2532433 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |