BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	2276 =	110 (1.090)	9 (0.020)	5/266	9.9	1.7%	intergenic (+56/+112)	USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004	hypothetical protein/hypothetical protein
*	?	NC_012417	2035 =	937 (1.060)	9 (0.020)	5/266	9.9	1.7%	intergenic (+268/+58)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 110 total aligned reads displayed.

AGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACAGAGCATCCAGCTGCAA  >  CP000731/2138‑2413

aGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTaaa                                                                                                                                         >  1:145929/1‑141 (MQ=255)

aGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTaaa                                                                                                                                         >  1:268420/1‑141 (MQ=255)

 gAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACGCTTAACTAAAc                                                                                                                                        >  2:217414/1‑141 (MQ=255)

      atatTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCa                                                                                                                                   >  1:374178/1‑141 (MQ=255)

      atatTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCa                                                                                                                                   >  1:150956/1‑141 (MQ=255)

        atTCATGTATTAGAAATTCAAATACACAGTAATTGTTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                                                 <  2:27884/141‑1 (MQ=255)

        atTCATGTATTAGAAATTCAAATAAAAAGTAATTGGTTATATAGTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTAAAAATGAAAAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                                                 <  2:33841/141‑1 (MQ=37)

          tCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACg                                                                                                                               <  2:122425/141‑1 (MQ=255)

           cATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATCTCAGCTATTGTTTTTTCTGAGTATATATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACGCTTACCTAAACTTGCAGACGa                                                                                                                              >  2:296199/1‑141 (MQ=37)

            aTGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGaa                                                                                                                             >  2:377954/1‑141 (MQ=255)

                       aTTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAg                                                                                                                  <  1:376606/141‑1 (MQ=255)

                        ttCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                                                 <  2:289535/141‑1 (MQ=255)

                        ttCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                                                 <  1:317731/141‑1 (MQ=255)

                        ttCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                                                 >  1:219478/1‑141 (MQ=255)

                        ttCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                                                 <  1:139300/141‑1 (MQ=255)

                          cAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGt                                                                                                               >  1:208664/1‑141 (MQ=255)

                           aaaTACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTg                                                                                                              >  2:150074/1‑141 (MQ=255)

                           aaaTACACAGTAATTGGTTATATATTTCAGCGATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTg                                                                                                              <  2:17269/141‑1 (MQ=255)

                            aaTACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGa                                                                                                             <  2:111198/141‑1 (MQ=255)

                            aaTACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGa                                                                                                             >  2:321041/1‑141 (MQ=255)

                             aTACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGGATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAg                                                                                                            <  1:133998/141‑1 (MQ=255)

                              tACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                                                           <  1:116628/141‑1 (MQ=255)

                              tACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                                                           <  1:46754/141‑1 (MQ=255)

                              tACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGAGTGAGc                                                                                                           >  2:299508/1‑141 (MQ=255)

                                cacaGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                                         >  1:208148/1‑141 (MQ=255)

                                 acaGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                                                        >  2:32801/1‑141 (MQ=255)

                                 acaGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                                                        <  2:381020/141‑1 (MQ=255)

                                 acaGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                                                        <  2:113226/141‑1 (MQ=255)

                                      aaTTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTGTGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                                                   >  1:43649/1‑141 (MQ=255)

                                          ggTTATATATTTCAGCTATTGTTTTTTTTTATTTTTAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCTAc                                                                                               >  2:319778/1‑141 (MQ=18)

                                          ggTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAc                                                                                               >  1:220626/1‑141 (MQ=255)

                                          ggTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAc                                                                                               >  2:185114/1‑141 (MQ=255)

                                            ttATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCa                                                                                             >  2:23661/1‑141 (MQ=255)

                                            ttATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGAGTGAGCTGTTAAGCCGACCa                                                                                             >  1:312786/1‑141 (MQ=255)

                                                 tatTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                                                        <  1:197223/141‑1 (MQ=255)

                                                  atTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                                       <  1:130227/141‑1 (MQ=255)

                                                  atTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                                       <  2:27491/141‑1 (MQ=255)

                                                  atTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                                       <  2:351170/141‑1 (MQ=255)

                                                      cAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                                                   <  1:27090/141‑1 (MQ=255)

                                                       aGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                                                  >  2:20089/1‑141 (MQ=255)

                                                       aGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                                                  >  2:20090/1‑141 (MQ=255)

                                                         cTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                                                <  1:62060/141‑1 (MQ=255)

                                                         cTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                                                <  1:163204/141‑1 (MQ=255)

                                                         cTATTGTTTTGTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCGTAACTAAACTTGCAGACGAATGTCGGCATAGCGGGAGCTATTAAGCCGACCATTCGACAAGtttt                                                                                <  2:88648/141‑1 (MQ=255)

                                                           aTTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTgg                                                                              <  2:46577/141‑1 (MQ=255)

                                                            ttGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTggg                                                                             >  1:300132/1‑141 (MQ=255)

                                                             tGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGa                                                                            >  1:232401/1‑141 (MQ=255)

                                                                 ttttATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGt                                                                        <  1:210564/141‑1 (MQ=255)

                                                                       gAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAggg                                                                  <  2:319380/141‑1 (MQ=255)

                                                                          gATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTc                                                               >  1:248671/1‑141 (MQ=255)

                                                                          gATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTc                                                               >  2:155846/1‑141 (MQ=255)

                                                                             aaataaGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGa                                                            <  1:201324/141‑1 (MQ=255)

                                                                              aataaGGACCATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAg                                                           <  1:35379/141‑1 (MQ=255)

                                                                               ataaGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                                                          >  1:361696/1‑141 (MQ=40)

                                                                               ataaGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                                                          >  1:250074/1‑141 (MQ=40)

                                                                                taaGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc                                                         <  2:121948/141‑1 (MQ=40)

                                                                                taaGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc                                                         <  2:6543/141‑1 (MQ=40)

                                                                                taaGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc                                                         <  2:19284/141‑1 (MQ=40)

                                                                                taaGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc                                                         <  2:84309/141‑1 (MQ=40)

                                                                                 aaGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCt                                                        >  1:321703/1‑141 (MQ=39)

                                                                                   ggAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCa                                                      >  2:66523/1‑141 (MQ=38)

                                                                                          cGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCaa                                               >  2:132981/1‑141 (MQ=32)

                                                                                          cGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCaa                                               <  2:208664/141‑1 (MQ=32)

                                                                                          cGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCaa                                               >  2:259872/1‑141 (MQ=32)

                                                                                           gTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAAt                                              <  1:319466/141‑1 (MQ=31)

                                                                                           gTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAAt                                              <  1:244864/141‑1 (MQ=31)

                                                                                               ttATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaaa                                          <  1:241737/141‑1 (MQ=11)

                                                                                                tATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAAc                                         <  1:713/141‑1 (MQ=31)

                                                                                                tATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAAc                                         <  1:23661/141‑1 (MQ=31)

                                                                                                 aTGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACa                                        <  1:288538/141‑1 (MQ=32)

                                                                                                 aTGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCACTCCACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCACCGTCAATAAAACa                                        <  1:292078/141‑1 (MQ=12)

                                                                                                  tGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACaa                                       <  2:301347/141‑1 (MQ=32)

                                                                                                    ccGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAAtt                                     <  1:150074/141‑1 (MQ=32)

                                                                                                       aaaaaaTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGGTTTGGGATTGTTAAGGGTTCCGGGGCTCAACGTCAATAAAACAATTGGa                                  >  1:178041/1‑141 (MQ=17)

                                                                                                        aaaaaTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTACGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGaa                                 <  2:309299/141‑1 (MQ=17)

                                                                                                        aaaaaTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGaa                                 >  2:65933/1‑141 (MQ=32)

                                                                                                         aaaaTTTATTTATGTTGTTAAGAACACTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGTGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGATGCTCAACGTCAATAAAACAATTGGAAt                                <  2:56667/141‑1 (MQ=11)

                                                                                                         aaaaTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAAt                                <  2:114394/141‑1 (MQ=32)

                                                                                                         aaaaTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAAt                                <  2:145134/141‑1 (MQ=32)

                                                                                                             tttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATaaaa                            >  2:11577/1‑141 (MQ=33)

                                                                                                              ttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAAt                           >  2:32187/1‑141 (MQ=34)

                                                                                                              ttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAAt                           <  2:338451/141‑1 (MQ=34)

                                                                                                               tATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATc                          <  2:219478/141‑1 (MQ=35)

                                                                                                                aTTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCa                         <  2:171190/141‑1 (MQ=35)

                                                                                                                     tGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTa                    <  1:157250/141‑1 (MQ=40)

                                                                                                                      gTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTAc                   >  2:109695/1‑141 (MQ=40)

                                                                                                                      gTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTAc                   <  1:312182/141‑1 (MQ=40)

                                                                                                                         gagaAGACCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACaga                >  2:281187/1‑141 (MQ=255)

                                                                                                                         gagaAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACaga                <  1:377954/141‑1 (MQ=255)

                                                                                                                          agaagaACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACagag               <  1:23495/141‑1 (MQ=255)

                                                                                                                            aagaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACAGAGCa             >  2:340538/1‑141 (MQ=255)

                                                                                                                            aagaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACAGAGCa             <  1:191809/141‑1 (MQ=255)

                                                                                                                              gaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACAGAGCATc           >  1:245752/1‑141 (MQ=255)

                                                                                                                               aaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACAGAGCATcc          <  1:311853/141‑1 (MQ=255)

                                                                                                                                 cccTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACAGAGCATCCAg        <  1:148502/141‑1 (MQ=255)

                                                                                                                                   cTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACAGAGCATCCAGCt      <  1:313517/141‑1 (MQ=255)

                                                                                                                                    ttAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACAGAGCATCCAGCTg     <  1:21236/141‑1 (MQ=255)

                                                                                                                                    ttAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACAGAGCATCCAGCTg     <  2:81339/141‑1 (MQ=255)

                                                                                                                                       aCTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACAGAGCATCCAGCTGCaa  >  2:320982/1‑141 (MQ=255)

                                                                                                                                       aCTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACAGAGCATCCAGCTGCaa  <  1:359114/141‑1 (MQ=255)

AGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAATCAACCTACAGAGCATCCAGCTGCAA  >  CP000731/2138‑2413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.