| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 512620 = | 16 (1.240) | 8 (0.970) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAAC |
8/160 | NT | 39.8% | intergenic (+688/‑6075) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 517814 | 22 (1.700) | intergenic (+5882/‑881) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
ATTACATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAG > USA300TCH1516_ALE/517685‑517944 | aTTACATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCAAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCaaaaaaa > 2:71139/1‑135 (MQ=17) aTTCATATGTCTGGTGACTTTAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTTCGCTAGAGTAGAATTTTGTCAGGCAAAAAAGGGagg < 1:75113/136‑3 (MQ=11) ttCATATGTCTGGTAACAAAAAAAAAAAAAACACACCTATTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatca < 1:63044‑M2/136‑13 (MQ=255) atatGTCTGGTGCCTATAGCAAGGAGGTCACACCTGTTCACATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaat < 1:93302‑M2/136‑16 (MQ=255) atatGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTTGAATTTACGTTCTGTTAGAGTAGAATGTTGTTAGGCAgttttttaatcaaat > 1:50929‑M2/1‑121 (MQ=255) gTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACTTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttg < 2:57276‑M2/136‑20 (MQ=255) cTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAGCGTTGCCAGGCAAAAAATGGATGCGATGAGCCg > 1:114669/1‑136 (MQ=17) gACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttctaatcaaattttggttaaca < 2:39917‑M2/136‑27 (MQ=255) tataGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCACTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaaa < 2:49301‑M2/136‑30 (MQ=255) taGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCATTAGCGTCGATGGTAGTAGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaacaa < 2:55266‑M2/136‑32 (MQ=255) aGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCg > 1:124047/1‑136 (MQ=32) gaggTCACACGTGTTCCCATGCCGAACACAGAAGATAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAAGGTTGCCAGGCAgttgtgtaatcacattttggtaaaaaaataaaatggac < 2:15083‑M2/136‑39 (MQ=255) gaggTCACACCTGTTTCCATGCCAAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGt > 1:155452/1‑136 (MQ=17) aggTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttattcaaattttggttaaaaaataaaatggaca > 1:155318‑M2/1‑97 (MQ=255) cacaCCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagat < 1:154229‑M2/136‑44 (MQ=255) ccTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCAGCATTGAGACCGCCAGATAACtttttt > 2:37695/1‑136 (MQ=11) ccTGTTCCCATGCCGAAAACAAAAGTTAAGCTACTTAGCGTCGAAGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaa < 1:136286‑M2/136‑48 (MQ=255) cTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaa < 2:17805‑M2/136‑49 (MQ=255) ttCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATTAGCCGCATTGATACCGCAAGGTCTCTTTTTTTATGt < 1:123325/136‑1 (MQ=18) cATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttat < 2:31053‑M2/136‑56 (MQ=255) acacAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAGCGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCa < 2:114669/136‑1 (MQ=17) acaGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCTATTTTTCTTTTTTTATGTCTAAAACGTCaaa < 1:145701/136‑1 (MQ=255) tAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatgaacaagataaaaacagttattgacttcaatgttgataa < 2:107935‑M2/136‑74 (MQ=255) aGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCa > 2:116806/1‑136 (MQ=33) tCCTTGGCGGCGATGGTAGTCGAATTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAac < 2:155452/136‑1 (MQ=255) ccTTAGCGTCGATAGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaataataaataaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgta > 2:80215‑M2/1‑57 (MQ=255) cGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaattggacaagataaataatgtttttgacttaaatgttgataaaatgtagaatta > 1:57276‑M2/1‑51 (MQ=255) tAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgatttaaatgtttataaaatgtataattaattcttgtc > 1:17805‑M2/1‑42 (MQ=255) aGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattcttgtcg > 1:71703‑M2/1‑41 (MQ=255) cgtatttATGTTCATCTAGAGTACAACGTTTCAAAGCAAAAAATGGATGCCATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGTTTGGc < 2:130351/131‑1 (MQ=11) aCTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattattgtcggtaaga < 2:55822‑M2/136‑102 (MQ=255) aCGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAACGGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAATTAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGa < 1:98339/136‑1 (MQ=255) gTTCCGCCAGAGTAGAACGTTGCCAGGAAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAATAGCAATCTCAAAGAAAAATGGCTTGGCGAAGTGaaa < 1:105059/136‑1 (MQ=11) gagTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGaa > 2:92360/1‑136 (MQ=33) agTAGAACGTTGCCAGGCAAAAAATGGACGCGATGAGCCGCATTGAGACCGCAATGTCTCTTTTTTTATGTCTAAAACGTCAAAAAAAAAAGCAAACAACAAGAAAAATGGCTTAGCGAAGCGAAAACGTTTGaaa > 2:159767/1‑135 (MQ=11) tAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCt > 1:156172/1‑136 (MQ=33) gAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTAAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCAAAGTAAAGATATTTGAAACtaa > 2:81238/1‑134 (MQ=11) gTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACAAAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGATGaa > 1:56583/1‑136 (MQ=18) ttGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATAGCGTGGCGAAGTGAAAACAGTTCAATCTAACGaaa > 2:116528/1‑136 (MQ=11) ttGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACAGCAAGGACTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGTAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAAACTGACGaaa > 1:27352/1‑136 (MQ=255) tGCCTGGCAAAAAATGAATACGAAAAACCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAAc > 1:2087/1‑136 (MQ=11) cAGGCAgttttttaatcaaattgtgagtaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattcttgtcggtaagaaaaatgaacattgaaaactagatgacaat < 2:50987‑M2/136‑131 (MQ=255) cAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACAGAAAAAAAAATGGCTTGGCGAAGTGAAAACGTTTGACTCTGACGAAACggg > 2:63126/1‑134 (MQ=255) | ATTACATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAG > USA300TCH1516_ALE/517685‑517944 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |