Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2176693–2181108	2181108	1–4416	2 [1]	[1] 2	ilvA/USA300TCH1516_02069	L‑threonine dehydratase biosynthetic IlvA/tRNA‑Gly

CAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCT  >  USA300TCH1516_ALE/2176559‑2176701                                                                                                                                      |          cAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATAGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCAcat         >  2:66686/1‑134 (MQ=17)        atGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCATCATGCTTCCACCTCGAACCt  <  1:138602/136‑1 (MQ=18)                                                                                                                                      |          CAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCT  >  USA300TCH1516_ALE/2176559‑2176701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑