Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2835791	2835841	51	2 [1]	[1] 2	hisA	1‑(5‑phosphoribosyl)‑5‑[(5‑ phosphoribosylamino)methylideneamino] imidazole‑4‑carboxamide isomerase

CGGGCATGCTGTGCCTTAGCACCTATCAAGTCGACGATATGAATACGATTCACACATTCAAATTGACTATAGTAAGCAATACTTTCTTCAGCCGAGCGTGACATTTTTTCTTCACTATCATATTTACCCTCTGTTAACCTCACACTTGTT  >  USA300TCH1516_ALE/2835655‑2835804                                                                                                                                        |               cGGGCATGCTGTGCCTTAGCACCTATCAAGTCCACGATATGAATACGATTCACACATTCAAATTGACTATAGTAAGCCATACTTTCTTCAGCCGAGCGTGACATTTTTTCTTAACTATCCAATTTACGCTCCGTTa                >  2:148907/1‑136 (MQ=255)               cTTAGCACCTATCAAGTCGACGATATGAATACGATTCACACATTCAAATTGACTATAGTAAGCAATACTTTCTTCAGCCGAGCGTGACATTTTTTCTTCACTATCTTATTTACCCTCTGTTAACCTCACACttgtt  <  1:47255/136‑1 (MQ=255)                                                                                                                                        |               CGGGCATGCTGTGCCTTAGCACCTATCAAGTCGACGATATGAATACGATTCACACATTCAAATTGACTATAGTAAGCAATACTTTCTTCAGCCGAGCGTGACATTTTTTCTTCACTATCATATTTACCCTCTGTTAACCTCACACTTGTT  >  USA300TCH1516_ALE/2835655‑2835804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑