| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2555346 = | 150 (0.980) | 12 (0.080) | 12/250 | 15.7 | 8.1% | intergenic (‑317/+552) | irtA/yfdG | Iron import ATP‑binding/permease protein IrtA/Prophage bactoprenol‑linked glucose translocase |
| ? | USA300TCH1516_ALE | 2555368 = | 134 (0.930) | intergenic (‑339/+530) | irtA/yfdG | Iron import ATP‑binding/permease protein IrtA/Prophage bactoprenol‑linked glucose translocase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCGAAAAATGATTTAATAGTTGAGTCATAGGATCATTAGATAAAGCGAATAATCAATTATAGGGACATTGGGATACAAATCAATGTACTAGACTCTACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCCAATTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2555493‑2555346‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaatttctCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGCTTTATCTAATGATCCTATGACTCAACTATTAAATCATTTTTCGAAATACTTAATT > USA300TCH1516_ALE/2555368‑2555503 tgCGAAAAATGATTTAATAGTTGAGTCATAGGATCATTAGATAAAGCGAATAATCAATTATAGGGACATTGGGATACAAATCAATGTACTAGACTCTACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCC < 2:979623/139‑1TTCGAAAAATGATTTAATAGTTGAGTCATAGGATCATTAGATAAAGCGAATAATCAATTATAGGGACATTGGGATACAAATCAATGTACTAGACTCTACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCC > 1:1245114/1‑141 TCGAAAAATGATTTAATAGTTGAGTCATAGGATCATTAGATAAAGCGAATAATCAATTATAGGTACATTGGGATACAAATCAATGTACTAGACTCTACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCCA < 1:939072/141‑1 TCGAAAAATGATTTAATAGTTGAGTCATAGGATCATTAGATAAAGCGAATAATCAATTATAGGGACATTGGGATACAAATCAATGTACTAGACTCTACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCCA > 1:1185259/1‑141 CGAAAAATGATTTAATAGTTGAGTCATAGGATCATTAGATAAAGCGAATAATCAATTATAGGGACATTGGGATACAAATCAATGTACTAGACTCTACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCCAA > 1:901933/1‑141 AAATGATTTAATAGTTGAGTCATAGGATCATTAGATAAAGCGAATAATCAATTATAGGGACATTGGGATACAAATCAATGTACTAGACTCTACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCCAATTTC > 4:464147/1‑141 ATGTACTAGACTCTACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCC < 4:15865/57‑1 ATGTACTAGACTCTACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCC > 3:15865/1‑57 TACTAGACTCTACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTC > 1:840794/1‑141 TACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGCTTTATCTA > 3:263470/1‑141 ACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGA < 2:1263027/97‑1 ACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGA > 1:1263027/1‑97 CAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCCA > 2:248234/1‑44 CAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCCA < 1:248234/44‑1 TTCAGGGACCCAACAAAGAGAAATTGGATTCCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGCTTTATCTAATGATCCTATGA > 1:43572/1‑141 GAAATTGGATTCCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGCTTTATCTAATGATCCTATGACTCAACTATTAAATCATTT > 1:958044/1‑141 TTGGATTCCCAATTTCTCTTCGTTGGGACCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTCGTATCCCAATGTCCCTATACTTGATTATTCGCTTTATCTCATGATCCTATGACTCAACTATTAAATCATTTGTCG > 4:180974/1‑141 GGATTCCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGCTTTATCTAATGATCCTATGACTCAACTATTAAATCATTTTTCGAA > 3:526038/1‑141 GATTCCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGCTTTATCTAATGATCCTATGACTCAACTATTAAATCATTTTTCGAAA < 2:840794/141‑1 GATTCCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGCTTTATCTAATGATCCTATGACTCAACTATTAAATCATTTTTCGAAA > 3:324305/1‑141 TTCCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCC < 2:1063021/76‑1 TTCCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCC > 1:1063021/1‑76 CCAAATTCTCTATGTTGGGTCCCTGAGTATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGCTTTATCTAATGATCCTATGACTCAACTATTAAATCATTTTTCGAAATACTT < 1:1136740/141‑1 aaTTCTCTATGTTGGGTCCCTGAGTATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGCTTTATCTAATGATCCTATGACTCAACTATTAAATCATTTTTCGAAATACTTAAT > 2:513654/3‑141 TTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGCTTTATCTAATGATCCTATGACTCAACTATTAAATCATTTTTCGAAATACTTAATT > 1:206223/1‑141 TTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGCTTTATCTAATGATCCTATGACTCAACTATTAAATCATTTTTCGAAATACTTAATT < 4:154859/141‑1 TTCGAAAAATGATTTAATAGTTGAGTCATAGGATCATTAGATAAAGCGAATAATCAATTATAGGGACATTGGGATACAAATCAATGTACTAGACTCTACAAGGCTATATTCAGGGACCCAACAAAGAGAAATTGGATTCCCAATTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2555493‑2555346‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaatttctCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGCTTTATCTAATGATCCTATGACTCAACTATTAAATCATTTTTCGAAATACTTAATT > USA300TCH1516_ALE/2555368‑2555503 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |