| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2742800 = | 54 (0.820) | 4 (0.060) | 4/246 | NT | 7.5% | coding (167/417 nt) | USA300HOU_RS14120 | hypothetical protein |
| ? | USA300TCH1516_ALE | 2742840 = | 47 (0.750) | coding (207/417 nt) | USA300HOU_RS14120 | hypothetical protein | |||||
AATAAATACTAAAAAGGGATACAATGCTATAAATAAGAAAAATAAAGGGATATAACATAGATAGTAAAGCCTTTTAGAAGTATGAAACAGCAACACAAATACAAAATAAATGACGCTACCAATTAGTAAGTGACATATTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2742942‑2742800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatttTGTATTTGTGTTGCTGTTTCATACTTCTAAAAGGCTTTACTATCTATGTTATATCCCTTTATTTTTCTTATTTATAGCATTGTATCCCTTTTTAGTATTTATTGCGCAACGTCCAATTTTTCAATTTAGTGTGACAGA > USA300TCH1516_ALE/2742840‑2742977 AATAAATACTAAAAAGGGATACAATGCTATAAATAAGAAAAATAAAGGGATATAACATAGATAGTAAAGCCTTTTAGAAGTATGAAACAGCAACACAAATACAAAATAAATGACGCTACCAATTAGTAAGTGACATATTA < 1:519206/140‑1AATAAATACTAAAAAGGGATACAATGCTATAAATAAGAAAAATAAAGGGATATAACATAGATAGTAAAGCCTTTTAGAAGTATGAAACAGCAACACAAATACAAAATAAATGACGCTACCAATTAGTAAGTGACATATTA < 1:637946/140‑1 ATAAAGACTAAAAAGGAATACAATGATAAAAATAAGAAAAATAAAGGGATATAACACAGATAGTAAAGCCTTTTAGAAGTATGAAACAGCAACACAAATACAAAATAAATGACGCTACCAATTAGTAAGTGACATATTAT < 2:623208/140‑1 TAAATACTAAAAAGGGATACAATGCTATAAATAAGAAAAATAAAGGGATATAACATATATAGTAAAGCCTTTTAGAAGTATGAAACAGCAACACAAATACAAAATAAATGACGCTACCAATTAGTAAGTGACATATTATT < 1:395368/140‑1 GAAAAATAAAGGGATATAACATAGATAGTAAAGCCTTTTAGAAGTATGAAACAGAAACACAAATACAAAATAAATGACGCTACCAATTAGTAAGTGACATATTATTTTGTATTTGTGTTGCTGTTTCATACTTCTAACAG > 1:508624/1‑140 CTTTTAGAAGTATGAAACAGCAACACAAATACAATATAAATGATGCTACCAATTAGTAAGTGACATATTATTTTGTATTTGTGTTGCTGTTTCATACTTCTAAAAGGCTTTACTATCTATGTTATATCCCTTTATTTTTC < 2:508624/140‑1 GACGCTACCAATTAGTAAGTGACATATTATTTTGTATTTGTGTTGCTGTTTCATACTTCTAAAAG > 1:671247/1‑65 GACGCTACCAATTAGTAAGTGACATATTATTTTGTATTTGTGTTGCTGTTTCATACTTCTAAAAG < 2:671247/65‑1 TTTGTATTTGTGTTGCTGTTTCATACTTCTAAAAGGCTTTACTATCTATGTTATATCCCTTTATTTTTCTTATTTATAGCATTGTATCCCTTTTTAGTATTTATTGCGCAACGTCCAATTTTTCAATTTAGTGTGACAGA > 1:755330/1‑140 AATAAATACTAAAAAGGGATACAATGCTATAAATAAGAAAAATAAAGGGATATAACATAGATAGTAAAGCCTTTTAGAAGTATGAAACAGCAACACAAATACAAAATAAATGACGCTACCAATTAGTAAGTGACATATTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2742942‑2742800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatttTGTATTTGTGTTGCTGTTTCATACTTCTAAAAGGCTTTACTATCTATGTTATATCCCTTTATTTTTCTTATTTATAGCATTGTATCCCTTTTTAGTATTTATTGCGCAACGTCCAATTTTTCAATTTAGTGTGACAGA > USA300TCH1516_ALE/2742840‑2742977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |