New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1378545	59 (0.900)	4 (0.060)	4/248	NT	7.5%	coding (6/1647 nt)	opuD_1	Glycine betaine transporter OpuD
	?	USA300TCH1516_ALE	= 1378579	42 (0.670)					coding (40/1647 nt)	opuD_1	Glycine betaine transporter OpuD

TTCAAGAAAATTTGATTATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGAACAATTCAACTATGTTACCAATAATATTAAAATG  >  USA300TCH1516_ALE/1378407‑1378683                                                                                                                                           |                                                                                                                                           ttCAAGAAAATTTGATTATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAAtt                                                                                                                                           <  2:501104/140‑1 (MQ=255)  tCAAGACAATTTCATTATTCCAAACACCTTGTTTATACTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAAttc                                                                                                                                          <  2:70371/140‑1 (MQ=255)  tCAAGAAAATTTGATTATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAAttc                                                                                                                                          <  2:672715/140‑1 (MQ=255)   cAAGAAAATTTGATTATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAAttct                                                                                                                                         <  2:540859/140‑1 (MQ=255)   cAAGAAAATGTGATTATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAAttct                                                                                                                                         <  2:93681/140‑1 (MQ=255)         aaTTTGATTATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATGGAAGGGAGTAATTAATTATGAATTCTTCTTCa                                                                                                                                   >  2:22452/1‑140 (MQ=255)           tttGATTATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCAcc                                                                                                                                 >  1:693932/1‑140 (MQ=255)           gttGATTATCGCCAAGACCGTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATCTATAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCAcc                                                                                                                                 <  1:262830/139‑1 (MQ=255)             tGATTATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCag                                                                                                                               >  1:791673/1‑140 (MQ=255)             tGATTATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCag                                                                                                                               <  2:487298/140‑1 (MQ=255)             tGATTATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCag                                                                                                                               <  2:444826/140‑1 (MQ=255)             tGATTATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCag                                                                                                                               >  1:200922/1‑140 (MQ=255)               aTTATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCagag                                                                                                                             <  1:705956/140‑1 (MQ=255)               aTTATCGAAAAGACCCTTGTTATCCTATAAATGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCagag                                                                                                                             <  2:414860/140‑1 (MQ=255)                 tATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAATTAATGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGaa                                                                                                                           <  1:756957/140‑1 (MQ=255)                       aaaGGCCTTTGTTAATCTATAAAGGTGCGTGTGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCaaa                                                                                                                     <  2:547584/140‑1 (MQ=255)                         aGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATg                                                                                                                   <  2:646199/140‑1 (MQ=255)                          gACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATgg                                                                                                                  >  1:596864/1‑140 (MQ=255)                          gACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATgg                                                                                                                  >  1:78846/1‑140 (MQ=255)                            ccTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGaa                                                                                                                >  1:693744/1‑140 (MQ=255)                             cTTTGTTATCCTATAAAGGTGCGTTAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAACTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGaaa                                                                                                               <  2:790580/140‑1 (MQ=255)                              tttGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAaag                                                                                                              <  1:704497/140‑1 (MQ=255)                               ttGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAaaga                                                                                                             >  1:568983/1‑140 (MQ=255)                                    aTCCTAGAAAGGTGCGTGCTGTATTTAATAAAATGTTTATGTAATTATTATATTCTACTACATAAGATTAAATATAGAAGTTAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTat                                                                                                        >  2:89787‑M2/1‑138 (MQ=255)                                      ccTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAACAGGAAATATAGAATTGAAGGGAGTAATTAATTATGCATTCTGCTTCACGACAAAATCCAACTGACAAGACGTagtg                                                                                                      <  2:582634‑M2/140‑5 (MQ=255)                                      ccTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGCAGTattc                                                                                                      <  1:743314‑M2/140‑5 (MQ=255)                                         ataAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCAcc                                                                                                   <  1:154900/140‑1 (MQ=255)                                          taAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCGACTACATAAAATTAAATATAAAATTGAAGGGAGTAATTAATTATGAATTCTTATTCAGCAGAGAATCCAAATGGAAAGAAGTACTCAccc                                                                                                  >  2:404521/1‑139 (MQ=255)                                           aaaGGTGTGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAg                                                                                                 <  2:638288/140‑1 (MQ=255)                                           aaaGGTGCGTTAGTTATTTAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAAGTATGAATTCTTCTACTACTAATATTGTTGATGGAAAGAAGTATTCACCAg                                                                                                 <  1:764259/140‑1 (MQ=255)                                           aaaGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCTCCAGAGAATCCAAATGGAAAGAAGTATTCACCAg                                                                                                 <  1:344002/140‑1 (MQ=255)                                           aaaGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCCGAGAATCCAAATGGAAAGAAGTATTCACCAg                                                                                                 <  1:657289/140‑1 (MQ=255)                                                   gTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATc                                                                                         >  1:395316/1‑140 (MQ=255)                                                      gtgtATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCtat                                                                                      <  2:394846/137‑1 (MQ=255)                                                       gTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCtata                                                                                     <  1:602310/140‑1 (MQ=255)                                                           ttGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGc                                                                                 >  2:393318/1‑140 (MQ=255)                                                               aTAAAATGTTTAGATAATATTTTGATTCTACTACATAAAATTAAAGAGAGAATTGAAGGGAGTAATTAATTATTAATTCTTCTGCACCAGAGAATCCGAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAAtt                                                                             <  1:563952/140‑1 (MQ=255)                                                                            ataataTTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAg                                                                >  2:580571/1‑140 (MQ=255)                                                                               atatatatATTCTACTACATAAAATTAAATATACAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCg                                                             <  1:161197/140‑1 (MQ=255)                                                                               atatTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCg                                                             <  1:164588/140‑1 (MQ=255)                                                                               atatTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCg                                                             <  2:220836/140‑1 (MQ=255)                                                                                tgtttttATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGt                                                            >  2:140099/3‑140 (MQ=255)                                                                                tatTTTTATTGATATATATAAAGTTAAATATAGAATTGAAGGGAGTAATTAATTATGCATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTAACCAGTCTTCATCTATAGTGCAATTGTTGTTACTATAGTCGt                                                            >  2:492731/1‑140 (MQ=255)                                                                                tatTTTTATTCTACTACATACAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATGCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTACAATTGTTGTTGCTATAGTCGt                                                            >  2:475310/1‑140 (MQ=255)                                                                                             ctacATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCa                                               <  2:51836/140‑1 (MQ=255)                                                                                              tacATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGAAt                                              >  2:313597/1‑140 (MQ=255)                                                                                                cATAATATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCAttt                                            <  1:22452/140‑1 (MQ=255)                                                                                                cATAAAATTAAACATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAAGCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCAttt                                            <  1:717644/140‑1 (MQ=255)                                                                                                    aaaTTAAATATAGAATTGAAGGGAGTAATTAATTATGAATacttctttccatttggattctctggtgaagaagaattcataattaattactcccttcaattctatatttaattt                                                                  <  1:739953‑M1/114‑75 (MQ=255)                                                                                                    aaaTTAAATATAGAATTGAAGGGAGTAATTAATTATGAATacttctttccatttggattctctggtgaagaagaattcataattaattactcccttcaattctatatttaattt                                                                  >  2:739953‑M1/1‑40 (MQ=255)                                                                                                    aaaTTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTattcataattaattactcccttcaattctatatttaattt                                                                  <  1:739953‑M2/114‑41 (MQ=255)                                                                                                    aaaTTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTattcataattaattactcccttcaattctatatttaattt                                                                  >  2:739953‑M2/1‑74 (MQ=255)                                                                                                       ttAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCCGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTg                                     >  2:227687/1‑140 (MQ=255)                                                                                                        tAAATATAGAATTGAAGGGAGTAATTAATTATGAATacttctttccatttggattctctggtgaagaagaattcataattaattactcccttcaattctatattta                                                                      >  2:656899‑M1/1‑36 (MQ=255)                                                                                                        tAAATATAGAATTGAAGGGAGTAATTAATTATGAATacttctttccatttggattctctggtgaagaagaattcataattaattactcccttcaattctatattta                                                                      <  1:656899‑M1/106‑71 (MQ=255)                                                                                                        tAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTattcataattaattactcccttcaattctatattta                                                                      <  1:656899‑M2/106‑37 (MQ=255)                                                                                                        tAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTattcataattaattactcccttcaattctatattta                                                                      >  2:656899‑M2/1‑70 (MQ=255)                                                                                                        tAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGa                                    <  2:651098/140‑1 (MQ=255)                                                                                                         aaaTATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTATGTTGTGCATTTTTACCTGaa                                   <  1:154721/140‑1 (MQ=255)                                                                                                         aaaTATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTGCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGaa                                   <  2:181192/140‑1 (MQ=255)                                                                                                          tatacAGAGTTGAATGGAGTAATTCAGTGTGATTTCTTCTTCACCAGAGGATCCAAATGGAAAGAAGTATTCACCAGTTTTCATCTATAGTGCTATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGAAc                                  <  2:317395/139‑1 (MQ=255)                                                                                                          aaTATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGAAc                                  <  2:291791/140‑1 (MQ=255)                                                                                                          aaTATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGAAc                                  <  1:438910/140‑1 (MQ=255)                                                                                                          aaTAGATAATTGAAGGGAGGAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGAAc                                  <  2:103055/140‑1 (MQ=255)                                                                                                                gAATTGAAGGGAGCAATTAATTACGGGTGCTACGTCACCAGAGAATCCAAATGGAAAGAAGTATTCATCAGGCTACATCTATAGTGCAATTTTGGTTGCTATATTCGTATTACTTGGTGCATTTTTACTTGCACAAGTCa                            >  2:398689/1‑140 (MQ=255)                                                                                                                        gggAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCAGAACAATTCAACTATGtt                    <  2:98899/140‑1 (MQ=255)                                                                                                                           aGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCt                                      <  2:470087/119‑1 (MQ=255)                                                                                                                           aGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCt                                      >  2:436669/1‑119 (MQ=255)                                                                                                                           aGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCt                                      <  1:436669/119‑1 (MQ=255)                                                                                                                           aGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCt                                      >  1:470087/1‑119 (MQ=255)                                                                                                                           aGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACCTGGTGCATTTTTACCt                                      >  2:45040/1‑119 (MQ=255)                                                                                                                           aGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACCTGGTGCATTTTTACCt                                      <  1:45040/119‑1 (MQ=255)                                                                                                                               attaattaTGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGAACAATTCCACTATGTTACCaata             >  1:638739/1‑140 (MQ=255)                                                                                                                               attaattaTGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGAACAATTCAACTATGTTACCaata             >  1:639559/1‑140 (MQ=255)                                                                                                                                     taTGCATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGAACAATTCAACTATGTTACCAATAATATTa       <  1:215255/140‑1 (MQ=255)                                                                                                                                        gAATactgctttccatttggattctctggtgaagaagaattcataattaattactcccttcaattctatatttaattttatgtagtagaataaaaatattatctaaacattttattcaataactcacgcacctttatagg    <  1:743314‑M1/140‑137 (MQ=255)                                                                                                                                        gAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGAACAATTCAACTATGTTACCAATAATATTaaaa    <  1:393318/140‑1 (MQ=255)                                                                                                                                        cactacgtcttgtcagttggattttgtcgtgaagcagaatgcataattaattactcccttcaattctatatttcctgttatgtagtagaataaaaatattatctaaacattttattcaataactcacgcacctttatagg    <  2:582634‑M1/137‑137 (MQ=255)                                                                                                                                          aTacttctttccatttggattctctggtgaagaagaattcataattaattactcccttaacttctatatttaatcttatgtagtagaatataataattacataaacattttattaaatacagcacgcacctttctaggat  >  2:89787‑M1/1‑2 (MQ=255)                                                                                                                                           |                                                                                                                                           TTCAAGAAAATTTGATTATCGCAAAGACCTTTGTTATCCTATAAAGGTGCGTGAGTTATTGAATAAAATGTTTAGATAATATTTTTATTCTACTACATAAAATTAAATATAGAATTGAAGGGAGTAATTAATTATGAATTCTTCTTCACCAGAGAATCCAAATGGAAAGAAGTATTCACCAGTCTTCATCTATAGTGCAATTGTTGTTGCTATAGTCGTATTACTTGGTGCATTTTTACCTGAACAATTCAACTATGTTACCAATAATATTAAAATG  >  USA300TCH1516_ALE/1378407‑1378683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.