| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2358790 | 76 (1.160) | 4 (0.060) | 3/248 | NT | 5.1% | coding (128/945 nt) | rpoA_1 | DNA‑directed RNA polymerase subunit alpha |
| ? | USA300TCH1516_ALE | = 2358806 | 77 (1.220) | coding (112/945 nt) | rpoA_1 | DNA‑directed RNA polymerase subunit alpha | |||||
AATGTTCATAATAATTGTAGAAACATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAATATCCTCCTTATATACGTCGACT > USA300TCH1516_ALE/2358672‑2358945 | aaTGTTCATAATAATTGTAGAAACATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGACGTTtccta < 2:369900‑M2/140‑6 (MQ=255) ttCATAATAATTGTAGAAACATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAgtgt < 2:420755/140‑1 (MQ=255) ttCATAATAATTGGAGAACCACCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAgtgt < 2:347445/140‑1 (MQ=255) tCATAATAATTGTAGAAACATCTTAAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTgta > 1:419512/1‑140 (MQ=255) cATAATAATTGTAGAAACATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTgtag < 1:325988/140‑1 (MQ=255) ataatTGTAGAAACATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTAcc > 1:737831/1‑140 (MQ=255) aatTGTAGCAACATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAACCTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTCTCCTAGTGTAGTACCGt < 2:213125/140‑1 (MQ=255) atTGTAGAAACATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAGCTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTa < 2:120599/140‑1 (MQ=255) atTGTAGAAACATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGCCGTAAGGAGTTTCCTAGTGTCGTTCCGTa > 1:10453/1‑140 (MQ=255) atTGTAGAAACATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTa < 2:373424/140‑1 (MQ=255) tGTAGAAACATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGc < 2:319686/140‑1 (MQ=255) gTAGAAACATCTTCAACTACATTGTCTACTGCTGAGCATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGcc > 1:344624/1‑140 (MQ=255) gAAACATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACg < 2:682793/140‑1 (MQ=255) gAAACATCTTCAACTACAGTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTGCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACg < 2:28737/140‑1 (MQ=255) caaaCCTCTGCAACTACTGTGTCTACTGCTGAGAATTCATCTAAAACGCCCTCACTTTCCATATTCTTAACGGCAGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACg < 2:283845/139‑1 (MQ=255) aCATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGAAACTCCTTACGTCGTAtcctactatcttcattaccaggtgcag > 1:773765‑M2/1‑113 (MQ=255) cATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTGGCCACGTTCt > 2:123250/1‑140 (MQ=255) aTCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTa < 2:533658/140‑1 (MQ=255) cTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTACGGAGTTTCCTAGTGTAGTACCGTAGCCAAGTTCTAGt > 1:615883/1‑140 (MQ=255) cTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGAAACTCCTTACGTCGTAtcctactatcttcaataccaggtggtgacgt < 2:773765‑M2/140‑32 (MQ=255) cTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATACTAGGATACCACGTACGGAGTTTCCTAGTCTAGTTCCGTATCCACGTTATAGt > 1:79711/1‑140 (MQ=255) aCTACATTGTCTACTGCTGAGAACTCATGTAAAACACCCTCAATTGCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAGGGAGTTTCCTACTGTAGTACCGTAGCCACGTTCTAGTGGTTc > 1:99959/1‑140 (MQ=255) cTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAGGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAAc < 1:463690/140‑1 (MQ=255) cTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACATGGTACTGAAGATAGTAGGATACGACGTACGGAGTTTCCTAGTGGAGTACCGTAGCCACGTTCTAGTGGCTCAACACCGAAc > 2:460595/1‑140 (MQ=255) gctgAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGCAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTGCAACAACGGACTCAcc > 1:171346/1‑140 (MQ=255) gctgAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCAAGTGGTAATGAAGATAGTAGGATACGACGTAATGAGTGTCCAAGTTGAGTACCGTAGACACTTTCTGTTGGTTCAACTACCaagtaggc > 2:76329/1‑134 (MQ=255) gaATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAAtt > 1:783813/1‑140 (MQ=255) aTTCATGTAAAACTCCCTCTATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTa < 2:710890/140‑1 (MQ=255) tCATGTAAATCTCCCTCAATTTCAATAGACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGc < 2:74550/140‑1 (MQ=255) cATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCa > 2:120996/1‑140 (MQ=255) aaCGCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGCATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCAc < 2:500585/140‑1 (MQ=255) cTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTa < 1:704138/140‑1 (MQ=255) ccTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAAtt < 1:306944/140‑1 (MQ=255) cacAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGAATACGACGTAAGCAGTTTCCTAGTGTAGTACCGTAGCCACGTTCAAGTGGTGCAACAACGAACTTCCCGAATACACCATCCTCACTAActt > 2:494247/3‑140 (MQ=255) cTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTGAACAACGAACTTAGCGAGTTTAGCATCTTCACTAAttt > 1:39852/1‑140 (MQ=255) cTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTACttt > 1:607335/1‑140 (MQ=255) ttCAATATACTTAACGGCTGCACCTGGTAATGTAGATCGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGGATTTAGCATCTTCACTAATTTCAATTg > 1:592441/1‑140 (MQ=255) tCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAGTTTAGCATCTTCACTAACTTCAATTGt > 2:78853/1‑140 (MQ=255) aaTAGACTTAGCGGCTGCACCTGGAAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTATAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGtct < 1:560086/140‑1 (MQ=255) ataCTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTGGCATCTTCACTAATCTCAATTGTCTCaa > 2:254370/1‑140 (MQ=255) ataCTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCaa < 1:508946/140‑1 (MQ=255) cTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTc < 1:330286/140‑1 (MQ=255) ttAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCt < 2:47511/140‑1 (MQ=255) tAAGGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAGGGAGTTTCCTAGTGTATTGCCGGAGCCACCTTATAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTa < 1:375909/140‑1 (MQ=255) aaCGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTGCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAg > 1:767572/1‑140 (MQ=255) aCGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCCACTCTAgg > 2:784459/1‑140 (MQ=255) aCGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAgg > 1:675683/1‑140 (MQ=255) ggCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGtt < 1:65445/140‑1 (MQ=255) gCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTGACCGAATTTAGCATCTTCACTAATTTCAATTGTCTACATTCTAGGttt > 2:779833/1‑140 (MQ=255) gCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGATCAACAACGAACTTACCGAATTCAGCATCTTCACTAATTTCAATTGTCCCAATTCTacgcct > 2:179595/1‑135 (MQ=255) cTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGtttt < 1:604763/140‑1 (MQ=255) tGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTCGGtgttt > 2:677279/1‑140 (MQ=255) tGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGttttt > 2:726973/1‑140 (MQ=255) tGCACCTGGTAATGAAGATAGTAGGATACGACGGAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTGGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGttttt > 2:744728/1‑140 (MQ=255) gCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTc > 2:121693/1‑140 (MQ=255) gCACCTGGGAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTc < 1:433519/140‑1 (MQ=255) cACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCg < 2:570209/140‑1 (MQ=255) cACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCg < 2:714875/140‑1 (MQ=255) cACCGGGTAATGAAGATAGTAGGTTACGACGTAAGGATGTTCCTAGTGTAGTACCGTAGCCGCGTTCTAGTGGTTCAACAACGCACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCg < 2:204056/140‑1 (MQ=255) cACCCGGTAAGGAATGTAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCg < 2:507954/140‑1 (MQ=255) tGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAACTCTAGGTTTTTCCAttt > 1:638179/1‑140 (MQ=255) tAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTCGCATCTTCACTGATTTCAACTGCCTCAATTCAAGGAGTTTCGATTTcac > 2:123002/1‑138 (MQ=255) aTGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATc > 2:459005/1‑140 (MQ=255) gATAGTAGGATACGACGTAAGGAGTTTCCTAGTGCAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTa < 2:776447/140‑1 (MQ=255) aTAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCGATTCTAGGTTTTTCGATTTCTATCATTTaa < 2:82199/140‑1 (MQ=255) aTAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTaa < 2:278889/140‑1 (MQ=255) aTAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTaa < 1:657565/140‑1 (MQ=255) agtagGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAat < 1:348304/140‑1 (MQ=255) agtagGATACGACGTAAGGAGTTTCCTAGGGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAat < 2:801430/140‑1 (MQ=255) gtagGATACGACGTAAGGAGTTTCCTAGTGTAGTACTGTAGCCACGTTCTAGTGGTTCAGCACCGAACTTACCGAATTCAGCATCTTCACTAATTTCAATTGTCTCAATTCTAAGATTTTCGATTTGTATAATTTAActa > 2:231276/1‑140 (MQ=255) gtagGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCCATTCTAGGTTTTTCGATTTCTATCATTTAAata > 2:447653/1‑140 (MQ=255) gtagGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAata < 2:17307/140‑1 (MQ=255) gtagGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAata < 1:410725/140‑1 (MQ=255) gtagGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAata < 1:100221/140‑1 (MQ=255) gtagGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACCTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAata < 1:410590/140‑1 (MQ=255) tagGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAatat < 2:764622/140‑1 (MQ=255) agGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAATAtc > 1:779415/1‑140 (MQ=255) ggATACGACGTAAGGAGTTTCCAATTGTAGTACCGTAGACACGTTCGAACGGATCAAAAATGCATTAACGTAATTTAGCATCTTCACTAATTTCAATGTTCTCAATTCTATATTTTTCGATTTCTATCATTTAAATAtct > 2:572114/1‑139 (MQ=255) tACGACGTAAGGAGTTtcctactatcttcattaccaggtgcagccgttaagtatattgaaattgagggagttttacatgaattctcagcagtagacaatgtagttgaagatgtttctacaattattatgaaccttaaaca < 2:232252‑M2/140‑125 (MQ=255) tACGACGTAAGGAGTTtcctactatcttcattaccaggtgcagccgttaagtatattgaaattgagggagttttacatgaattctcagcagtagacaatgtagttgaagatgtttctacaattattatgaacattaaaga < 1:212226‑M2/140‑125 (MQ=255) tACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAATAtcctcc > 1:285256/1‑140 (MQ=255) gacgTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTACTTTCAATTGTCTCAATTCTCGGTTTTTCTATTTCTATCATTTAAATATCCTCCTta > 2:417651/1‑140 (MQ=255) acgTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAATATCCTCCTtat > 1:740858/1‑140 (MQ=255) cgTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAATATTCTCCTtata > 1:491450/1‑140 (MQ=255) cgTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAATATCCTCCTtata < 2:671565/140‑1 (MQ=255) gTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAATATCCTCCTTATATACGTCGa > 1:768247/1‑140 (MQ=255) ttCCTAGTGTAGTACCGTAGCCACGTTCTAGTCGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAATATCCTCCTTATATACGTCGACt < 2:62949/140‑1 (MQ=255) | AATGTTCATAATAATTGTAGAAACATCTTCAACTACATTGTCTACTGCTGAGAATTCATGTAAAACTCCCTCAATTTCAATATACTTAACGGCTGCACCTGGTAATGAAGATAGTAGGATACGACGTAAGGAGTTTCCTAGTGTAGTACCGTAGCCACGTTCTAGTGGTTCAACAACGAACTTACCGAATTTAGCATCTTCACTAATTTCAATTGTCTCAATTCTAGGTTTTTCGATTTCTATCATTTAAATATCCTCCTTATATACGTCGACT > USA300TCH1516_ALE/2358672‑2358945 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |