BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000731	81	N→G	100%	intergenic (–/‑151)	– / → repA	–/replication protein A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000731	81	0	N	G	100.0%	481.8 / NA	139	intergenic (–/‑151)	–/repA	–/replication protein A
Reads supporting (aligned to +/- strand): ref base N (0/0); new base G (82/57); total (82/57)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 139 total aligned reads displayed.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAA  >  CP000731/1‑217

tatttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGaa                                                                                                                                        >  1:603933‑M1/58‑140 (MQ=255)

  tttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAAc                                                                                                                                      >  2:582785‑M1/56‑140 (MQ=255)

    tatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTg                                                                                                                                    >  1:145223‑M1/54‑140 (MQ=255)

    tatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTg                                                                                                                                    >  1:795686‑M1/54‑140 (MQ=255)

       caagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACATTCAGAAACAGttt                                                                                                                                 <  2:664175‑M1/90‑1 (MQ=255)

         agggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGCTTAGAAACTGtttat                                                                                                                               <  2:640855‑M1/92‑1 (MQ=255)

          gggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGtttatt                                                                                                                              <  1:200389‑M1/93‑1 (MQ=255)

               tatacacccctgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTtatat                                                                                                                         >  1:102014‑M1/43‑140 (MQ=255)

               tataaacccttgataaagctatattttcccttttataagtttCTTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTCAGAAACTGTTTATTgatat                                                                                                                         <  2:162593‑M1/98‑1 (MQ=255)

               tataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTtatat                                                                                                                         <  1:271959‑M1/98‑1 (MQ=255)

                ataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATGtatata                                                                                                                        <  2:636875‑M1/99‑1 (MQ=255)

                   tactcttgataaagctatattttcccttttagaagcgtATTTAAAGTGATACCAACTCCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAAtt                                                                                                                     >  2:738330‑M1/39‑140 (MQ=255)

                    tcccttgatagagccatatttccccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAAttt                                                                                                                    >  2:725690‑M1/38‑140 (MQ=255)

                    tcccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTTCTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAAttt                                                                                                                    >  2:409168‑M1/38‑140 (MQ=255)

                    acccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTAGTAATAGTCGGGGTTTGGTAATA‑CAACGAATCGAAACTGTTTATTTATATaatat                                                                                                                    <  2:127010‑M1/103‑3 (MQ=255)

                    accctcgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAAttt                                                                                                                    >  1:470183‑M1/38‑140 (MQ=255)

                      ccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAATAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTc                                                                                                                  >  1:408692‑M1/36‑140 (MQ=255)

                      ccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTc                                                                                                                  <  1:229329‑M1/105‑1 (MQ=255)

                        ttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGa                                                                                                                >  1:484172‑M1/34‑140 (MQ=255)

                           ataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATAc                                                                                                             >  1:97023‑M1/31‑140 (MQ=255)

                            taaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                                                                                            <  2:255546‑M1/111‑1 (MQ=255)

                            taaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                                                                                            >  1:710873‑M1/30‑140 (MQ=255)

                            taaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                                                                                            <  1:758100‑M1/111‑1 (MQ=255)

                            taaagctatattatcgactgtataagttcATTTAAGTTTCTGTAATAACCTTAATATAACAAAAACTCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                                                                                            >  2:164015‑M1/30‑140 (MQ=255)

                              aagctatattttcccttttataagtttATTTAAAGTGGTATAATAAACTGAATATAACAAAAAACCGAACTACTGGTAATAGTGGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTg                                                                                                          <  1:649868‑M1/113‑1 (MQ=255)

                                gctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGta                                                                                                        >  2:585797‑M1/26‑140 (MQ=255)

                                 ctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtat                                                                                                       <  1:576461‑M1/116‑1 (MQ=255)

                                  tatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatt                                                                                                      >  2:187049‑M1/24‑140 (MQ=255)

                                      ttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtatat                                                                                                  <  1:379285‑M1/121‑1 (MQ=255)

                                         tcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAAt                                                                                               <  1:601401‑M1/124‑1 (MQ=255)

                                          cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGTGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATg                                                                                              >  2:727635‑M1/16‑140 (MQ=255)

                                             ttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATCATTTTCGATACTTGTATTATATACtgact                                                                                           <  1:163464‑M1/128‑3 (MQ=255)

                                             ttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaat                                                                                           >  1:747634‑M1/13‑140 (MQ=255)

                                                   aagtttATTTAAAGTGCTATAATAATCTGAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATc                                                                                     >  2:355044‑M1/7‑140 (MQ=255)

                                                        tATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAGCGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGt                                                                                >  1:89873‑M1/2‑140 (MQ=255)

                                                        tATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGt                                                                                >  1:670580‑M1/2‑140 (MQ=255)

                                                        tATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGt                                                                                >  1:442285‑M1/2‑140 (MQ=255)

                                                           ttAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATCCTTGTATTATATAATGACTAATCTCTGCGTGcc                                                                             >  1:370427/1‑139 (MQ=255)

                                                              aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGc                                                                          >  1:53444/1‑140 (MQ=255)

                                                                gTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc                                                                        <  2:311336/140‑1 (MQ=255)

                                                                 tGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc                                                                       <  1:337610/140‑1 (MQ=255)

                                                                 tGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc                                                                       <  1:322444/140‑1 (MQ=255)

                                                                  gCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCt                                                                      <  2:271959/140‑1 (MQ=255)

                                                                   cTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTCTATTATATAATAATTAATATCTTAGTGAAAGCAccaa                                                                     >  2:57727/1‑138 (MQ=255)

                                                                    tataATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTaa                                                                    <  1:353286/140‑1 (MQ=255)

                                                                     ataataAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTaaa                                                                   <  2:622024/140‑1 (MQ=255)

                                                                      taataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAAt                                                                  >  1:466756/1‑140 (MQ=255)

                                                                       aataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATCATATCTTAGTGCAAGCACATAAATc                                                                 >  2:245156/1‑140 (MQ=255)

                                                                       aataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATc                                                                 >  2:711089/1‑140 (MQ=255)

                                                                         taaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCAt                                                               <  1:317751/140‑1 (MQ=255)

                                                                         taaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCAt                                                               <  1:328552/140‑1 (MQ=255)

                                                                             cTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtaaa                                                           >  1:28750/1‑140 (MQ=255)

                                                                             cTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtaaa                                                           >  2:414965/1‑140 (MQ=255)

                                                                             cTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtaaa                                                           >  2:548953/1‑140 (MQ=255)

                                                                                aaTATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATCTTAGATCCAATAAATATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtaaataa                                                        >  1:341606/1‑140 (MQ=255)

                                                                                aaTATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAAATGTTTCTTTATCGAATTTTCGGGACGTGTATTATATCATGAATAATATCTTAGTGGAAGCACCTAAATCATtaaataa                                                        >  1:376174/1‑140 (MQ=255)

                                                                                   ataACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATg                                                     >  1:619566/1‑140 (MQ=255)

                                                                                   ataACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATg                                                     <  1:614851/140‑1 (MQ=255)

                                                                                    taACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATACATGt                                                    >  1:98156/1‑140 (MQ=255)

                                                                                     aaCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTa                                                   >  1:80895/1‑140 (MQ=255)

                                                                                      aCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTaa                                                  >  1:595970/1‑140 (MQ=255)

                                                                                         aaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGc                                               <  1:631525/140‑1 (MQ=255)

                                                                                         aaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGc                                               <  1:671638/140‑1 (MQ=255)

                                                                                          aaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCt                                              <  2:24674/140‑1 (MQ=255)

                                                                                            aCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATTTTAGTGCAAGCAGCTAAATAATTAAATAAATGTAAAACtaa                                            >  2:500888/1‑140 (MQ=255)

                                                                                            aCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaa                                            >  2:677797/1‑140 (MQ=255)

                                                                                            aCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaa                                            >  1:436224/1‑140 (MQ=255)

                                                                                             ccccAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaa                                           >  2:685844/1‑140 (MQ=255)

                                                                                             ccccAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACAGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaa                                           >  2:405534/1‑140 (MQ=255)

                                                                                              cccAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaat                                          >  2:791668/1‑140 (MQ=255)

                                                                                              cccAACTACTGGTAATAGCCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaat                                          <  1:195088/140‑1 (MQ=255)

                                                                                              cccAACGACTGGTAATAGTCGGGGTTTGGTAATACAAACG‑CTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTGAATCATTAAATAAATGTAAAGCtaaat                                          <  2:777115/140‑1 (MQ=255)

                                                                                               ccAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaata                                         >  1:745608/1‑140 (MQ=255)

                                                                                               ccAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaata                                         <  1:243809/140‑1 (MQ=255)

                                                                                               ccAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaata                                         >  1:487927/1‑140 (MQ=255)

                                                                                                cAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACTTAAATCATTAAATAAATGTAAAGCtaaataa                                        >  2:504915/1‑140 (MQ=255)

                                                                                                     tcgggTAATGGTCGGGGGTGAGTAATA‑AAACCGTTAGAAACTGTTTATTTATAGAAGTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACg                                   <  2:387441/137‑1 (MQ=255)

                                                                                                     actGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACg                                   <  2:336198/140‑1 (MQ=255)

                                                                                                     aatGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAAACAATACAAAAGTGTAAAGCTAAATAAAAACg                                   <  2:659584/138‑1 (MQ=255)

                                                                                                          tAATAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTtta                              >  1:85980/1‑140 (MQ=255)

                                                                                                           aaTAGTCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAACCGTTctat                             >  2:433323/1‑140 (MQ=255)

                                                                                                               gttggggTGTGGTAATA‑AAACGTTTAGAAACAGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTAcc                         <  2:141487/137‑1 (MQ=255)

                                                                                                                tCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACct                        >  1:575928/1‑140 (MQ=255)

                                                                                                                tCGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACct                        <  1:159326/140‑1 (MQ=255)

                                                                                                                 cGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACctc                       <  2:601401/140‑1 (MQ=255)

                                                                                                                 cGGGGTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACctc                       >  2:283793/1‑140 (MQ=255)

                                                                                                                    ggTTTGGTAATA‑AAACGTTTGGAAACGGCAGAAGTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGATTTATTACCTCTTa                    >  2:447135/1‑140 (MQ=255)

                                                                                                                     gTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTAc                   <  1:27393/140‑1 (MQ=255)

                                                                                                                     gTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTAc                   >  2:734375/1‑140 (MQ=255)

                                                                                                                     gTTTGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGAAAACATAAATAAAAACGTTTTATTACCTCTTAc                   >  2:734378/1‑140 (MQ=255)

                                                                                                                      tttGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTAcc                  <  1:394971/140‑1 (MQ=255)

                                                                                                                        tGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTAccca                >  2:411752/1‑138 (MQ=255)

                                                                                                                        tGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaa                >  2:561766/1‑140 (MQ=255)

                                                                                                                        tGGTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaa                >  2:664696/1‑140 (MQ=255)

                                                                                                                         ggTAATA‑AAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAACTGTACAGAAAAATAAAAACGGTATAGTACATCTTACCaaa               >  2:564322/1‑140 (MQ=255)

                                                                                                                            aata‑aAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTa            <  2:525293/140‑1 (MQ=255)

                                                                                                                               a‑aaaCGTTTAGAAACTGTTTATTTATATCATTTTCGATACTTGTATTATATAATGAATACTATCTTAGTGCAATCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACCTTTTATTACCTCTTACCAAACTaaaa         <  2:149049/140‑1 (MQ=255)

                                                                                                                                  aaCGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAata       <  1:640855/140‑1 (MQ=255)

                                                                                                                                     gTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACTAAACTCAAATAAgg    >  2:515054/1‑140 (MQ=255)

                                                                                                                                       ttAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGaa  >  2:253336/1‑140 (MQ=255)

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATA‑AAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAA  >  CP000731/1‑217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`