| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 842,690 | A→G | 7.4% | intergenic (+76/‑586) | uvrA → / → hprK | UvrABC system protein A/HPr kinase/phosphorylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 842,690 | 0 | A | G | 7.4% | 175.7 / 4.1 | 65 | intergenic (+76/‑586) | uvrA/hprK | UvrABC system protein A/HPr kinase/phosphorylase |
| Reads supporting (aligned to +/- strand): ref base A (29/31); new base G (3/2); total (32/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.48e-01 | |||||||||||
ACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCTTTGTCATTAGCCACAGCT > USA300TCH1516_ALE/842555‑842829 | aCAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAAAAATTTCCGGAAAACAAATAAGGTTCAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTGTTTATTAATTTAGTAATGAATAATAGaaagaaaag > 2:782339/1‑140 (MQ=255) aactagttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt < 2:378914/134‑1 (MQ=255) aaGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt < 1:741598/140‑1 (MQ=255) gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAGTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaa < 1:237247/140‑1 (MQ=255) gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGGTATAAATTTATCCTTCGCTTATTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaa > 2:284538/1‑140 (MQ=255) tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGTGGCGTaaa > 2:453080/1‑140 (MQ=255) tttAAAAGAAGTAGTTGAACGAGATAAACAAAATACTGAAGATAACTAAGATCAAAAGAAGTGAAGTATGTTAGAAATTCATCCTTCGCTTCTTTTTATTAATTGAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaaa < 2:135000/140‑1 (MQ=255) tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaaa < 2:717849/140‑1 (MQ=255) tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaaa > 1:85055/1‑140 (MQ=255) gaagTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTAt < 2:274190/140‑1 (MQ=255) agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGt > 1:669049/1‑140 (MQ=255) agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGt > 1:264217/1‑140 (MQ=255) gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAACGATGCGTAAAAAGAATTATGtt > 2:72377/1‑140 (MQ=255) aCTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCACTTCTATTTATTAGTTTAGTAAAGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAATAGGATaa > 2:483394/1‑140 (MQ=255) aaCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAg < 1:140888/140‑1 (MQ=255) aaaTAAACAAAATACTGAAGATAAATAAGATTAAACGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTc < 2:475800/138‑1 (MQ=255) aTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATGTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa < 2:253263/140‑1 (MQ=255) aaaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCTCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATc > 2:519784/1‑140 (MQ=255) aaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAATGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCt < 2:434575/140‑1 (MQ=255) aaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCt > 1:779813/1‑140 (MQ=255) aaaaTACTGAAGATAAATAAGATTTAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTGAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTaga < 2:208150/140‑1 (MQ=255) aaaaCACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTaga < 1:229292/140‑1 (MQ=255) aaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTagag < 2:378899/140‑1 (MQ=255) aagaCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAATATGTTAAGATAGGGTCAATCTAGagt < 1:521067/137‑1 (MQ=255) aGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTCAGTAATGAATAGTAGAAAGGAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAAc > 2:698619/1‑140 (MQ=255) aGATAAATAAGATTAAAAGAAGTGAAGGATGTAATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGGAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAAc > 2:702156/1‑140 (MQ=255) ataaagaaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGATTTGCTGCTTAGAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACAt < 1:151340/140‑1 (MQ=255) agaagTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAg > 2:11430/1‑140 (MQ=255) agaagTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAg > 2:417840/1‑140 (MQ=255) agaagTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAg > 2:577799/1‑140 (MQ=255) gaagTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGGAAAGATGCGTAAAAAGACTTACATTACTTAAGGGTGAATCTAGAGTAGTGAAACATAAATCGAACTGGGCGt > 2:167538/1‑140 (MQ=255) aagTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTg > 1:570389/1‑140 (MQ=255) aagTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATATAGAGTAGTTAAACATAAATAGAAATGGGAggg > 2:403104/1‑138 (MQ=255) gAAGGATGTTATAAATTTTTCCTTCGCTTCTTTTTATTAATTTAGTAACGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGAc < 2:118118/140‑1 (MQ=255) gAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAACAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGAc > 1:772943/1‑140 (MQ=255) aGGATGTTATAAAGTTATCCTTCGCTTCTGTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGAAGCGTAAAGGTAATAGCCTAAAGGTCATACTATGCTAGAGTAGTTAAACATAAATCGAACGGGGAGTGGGACAg < 2:360978/140‑1 (MQ=255) ttATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGCAATGa > 2:372900/1‑140 (MQ=255) ttATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGa > 1:409047/1‑140 (MQ=255) tataAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGAt < 1:151633/140‑1 (MQ=255) taAATTTCTCTTGTGTTTTTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGCAGAGTAAAAAGAAGTATGGTAAGAGAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATaa < 1:157261/140‑1 (MQ=255) taAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATaa < 1:526503/140‑1 (MQ=255) aaTTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAg > 1:141571/1‑140 (MQ=255) tCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATATAGAGCAGTTAAACATAAATCGAACTGGGAGTGGGAAAGAAATGCTAAAGAAtaca > 2:441881/1‑137 (MQ=255) gccTTCGCTGCTTTTTATTAATATAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGCACGATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCAc < 1:113746/139‑1 (MQ=255) ccTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACt > 1:120439/1‑140 (MQ=255) tCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAACAGATGCGTAGAAAGAATTAGGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAAt < 2:585357/140‑1 (MQ=255) cttcgtTGTATTAAGATAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAGACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGAt < 1:602682/140‑1 (MQ=255) ttttATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGAGTCAATCTGGAGTAGTAATAGTGTATCCGAACTGAGAGTGGGACAGAAATGATAAAGAATCACTAATGATttata > 1:221817/1‑139 (MQ=37) tttATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAGTGATttatta > 1:14961/1‑140 (MQ=255) tattaATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATg > 2:79160/1‑140 (MQ=255) attaATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGt < 2:728446/140‑1 (MQ=255) ttaATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTAGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTa < 2:779813/140‑1 (MQ=255) taATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAg < 1:541251/140‑1 (MQ=255) aTTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGACTCACTAATGATTTATTATGTAGTg > 1:549002/1‑140 (MQ=255) aTTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGCAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGACTTATTATGTAGTg > 2:647578/1‑140 (MQ=255) aTTTAGTAATGAAGAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTg < 1:451131/140‑1 (MQ=255) ttattaATGAATAGTATAAAGAAGAGATGGGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGt < 2:274666/140‑1 (MQ=255) tAGTAATGAATAGTAGAAAGGAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGtt < 1:698619/140‑1 (MQ=255) tAGTAATGAATAGTAGAAAGGAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGtt < 1:702156/140‑1 (MQ=255) gTAATGAATAGTAGAAAGAAAAGATGGGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCt < 1:111288/140‑1 (MQ=255) tAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATGAAGAATCACTAATGATTTATTATGTAGTGGTTCtt > 1:217737/1‑140 (MQ=255) tGAATGGGAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCTTTGt < 2:85055/140‑1 (MQ=255) gAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCTTTGTc > 1:595154/1‑140 (MQ=255) tagtagAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGGTAAACATAAATCGAACTGGGAGCGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTAGTTCTTTGTCAtt > 2:395269/1‑140 (MQ=255) gtagAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCTTTGTCATTAg > 1:137593/1‑140 (MQ=255) gtagAAAGAAAAGATGCGGAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCTTTGTCATTAg < 2:555327/140‑1 (MQ=255) agaaagaaAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCGTTGTCATTAGcc > 2:2523/1‑140 (MQ=255) gaaagaaaAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCTTTGTCATTACCca > 2:471106/1‑140 (MQ=255) aaagaaaagaTGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCTTTGTCATTAGCcac < 1:417840/140‑1 (MQ=255) aaagaaaagaTGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCTTTGTCATTAGCcac < 1:11430/140‑1 (MQ=255) agaaaagaTGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGGTCTTTGTCATTAGCCACAg > 2:428033/1‑140 (MQ=255) gaaaagaTGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCTTTGTCATTAGCCACAGc < 1:132848/140‑1 (MQ=255) aaaagaTGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCTTTGTCATTAGCCACAGCt > 2:470249/1‑140 (MQ=255) aaaagaTGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCTTTGTCATTAGCCACAGCt < 2:224364/140‑1 (MQ=255) | ACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAATGATTTATTATGTAGTGGTTCTTTGTCATTAGCCACAGCT > USA300TCH1516_ALE/842555‑842829 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |