| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 127847 | 87 (0.770) | 5 (0.050) | 5/248 | 15.8 | 5.9% | intergenic (+67/+262) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A |
| ? | USA300TCH1516_ALE | = 127871 | 81 (0.780) | intergenic (+91/+238) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTAAAAATGACGTTAAAATACAGTATTATATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/127699‑127847‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcgaactagACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAATAAAAGC < USA300TCH1516_ALE/127871‑127736 ATTAAAAATGACGTTAAAATACAGTATTATATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATATAATTATTCATGAAT > 3:398362/1‑141 AAAAATGACGTTAAAATACAGTATTATATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGA > 1:174332/1‑141 AAAAATGACGTTAAAATACAGTATTATATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGA > 1:62212/1‑141 AAATGACGTTAAAATACAGTATGTTATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACAGTTTAAATCTAATTATTCATGAATCGAAC < 3:183139/141‑1 AATGACGTTAAAATACAGTATTATATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAAat > 4:72897/1‑139 AATGACGTTAAAATACAGTATTATATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACT < 1:604434/141‑1 CTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGACAAGATGCTCATTGCATTTCGTACTAGTT < 3:152699/141‑1 ACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTTAGGC‑‑ATTA‑‑‑AAAAATCGAACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTC < 3:378497/141‑1 ACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTTAGGC‑‑ATTA‑‑‑AAAAATCGAACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTT < 4:93835/141‑1 AAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGACAAGATGCTCATTGCATTTCGTACT > 4:170675/1‑89 AAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGACAAGATGCTCATTGCATTTCGTACT < 3:170675/89‑1 AATCGAACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAAT > 3:384035/1‑141 ATCGAACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAATA > 2:720453/1‑141 CGAACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAATAAA > 1:224605/1‑141 CGAACTAGACAAGATGCTCATTGCATTTAGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAATAAA > 3:157549/1‑141 GAACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAAT < 2:309517/75‑1 GAACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAAT > 1:309517/1‑75 AACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAATAAAAG < 3:34891/141‑1 AACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAATAAAAG < 3:379251/141‑1 ACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAATAAAAGC < 1:719672/141‑1 ACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCA > 2:329470/1‑126 ACTAGACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCA < 1:329470/126‑1 ATTAAAAATGACGTTAAAATACAGTATTATATTTGTTGCTTTTATTTGTGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/127699‑127847‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcgaactagACAAGATGCTCATTGCATTTCGTACTAGTTCGATTCATGAATAATTAGATTTAAAATGTCATTTGAATCCAAGTGACAACATTATTTATATTTAGAATATTAACGTTAGTATAAACGTCCAAACACAAATAAAAGC < USA300TCH1516_ALE/127871‑127736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |