| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 517440 = | NA (NA) | 28 (0.090) | 13/146 | NT | NA | intergenic (+5508/‑1255) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 517458 = | NA (NA) | intergenic (+5526/‑1237) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
Only 100 of 394 total aligned reads displayed.
ATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/517536‑517440‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctatgTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT > USA300TCH1516_ALE/517458‑517547 ATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCA > 1:313855/1‑91 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGTCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 1:866533/1‑91 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCCGCACTTATCCCGTCCACACATAGCTACCCAG < 1:3806194/91‑1 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 2:6536194/1‑91 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 1:4153036/1‑91 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG < 1:5784578/91‑1 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAAGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 1:6972760/1‑91 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC > 2:3974299/1‑91 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC > 1:3280861/1‑91 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:4040339/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC > 1:4498280/1‑91 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 2:4815282/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:5417227/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:5529769/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:101392/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:6554469/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 2:3774348/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 2:305056/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC > 2:1143850/1‑91 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC > 2:1638342/1‑91 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 2:1884573/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:2161137/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 2:814050/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 2:6234508/91‑1 TTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCT < 2:5274769/91‑1 TTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCT > 2:6445712/1‑91 TTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCT < 2:2754050/91‑1 TATAACCGAAGTTGGGAAGTCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 1:3360085/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 1:1477901/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 2:6728547/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 1:5927202/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 1:209767/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 2:6054883/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 2:4528266/91‑1 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGTCTTCATGCTTAGATGCTTTCATCACTTATCTCGTCCACACATAGCTACCCAGCTAT < 2:5854844/91‑1 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT < 2:6311613/91‑1 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT < 1:3686839/91‑1 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT < 1:2057138/91‑1 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT < 1:4396519/91‑1 aAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 2:4370561/90‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 1:5267162/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 1:5075167/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG > 1:2340982/1‑91 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 1:2583500/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 1:2802337/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 1:2717355/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 1:3211803/91‑1 AGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTGGGTAGCTATGTGTGGAC < 2:5159720/91‑1 AATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTGGGTAGCTATGTGTGGACGGGATAAG < 1:222240/91‑1 CTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTGGGTAGCTATGTGTGGACGGGATAAGTGC < 1:2998345/91‑1 CCACACATAGCTACCCAGCTATGTGTGGACGCGATAAGTGCTGAAAGCATCTAAGCAGGAAGCCCCCCTCAAGATGTGATGTCCCAACTTC > 1:6402555/1‑91 ATAGCTACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTAT > 1:2810830/1‑91 ATAGCTACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTAT > 2:4057171/1‑91 ATAGCTACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTAT > 2:5965015/1‑91 TAGCTACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATA > 1:6687877/1‑91 TAGCTACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATA > 1:3466234/1‑91 AGCTACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTCCGCAAGAAGCCCCCCTCAAGATGCGCTTTCCCAATCTCGGTTACAA > 2:6986840/1‑91 GCTACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGCGATTTCCCAACTTCGGTTATAAG > 2:4900851/1‑91 TACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGAT > 2:910992/1‑91 TACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGAT > 1:6202878/1‑91 ACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATC > 2:1778626/1‑91 ACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATC > 1:288103/1‑91 ACCCAGCTATGTGTGGACGGGATAAGCGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATC > 2:1327408/1‑91 CCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCC > 1:4713765/1‑91 CCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCC > 1:3573895/1‑91 CCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCC > 2:3357074/1‑91 CCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCC > 2:2833792/1‑91 CCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCC > 2:862177/1‑91 CCCAGCTATGTGTGGACGGGATAAGTCCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCC > 2:1031611/1‑91 CAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCT > 1:1163245/1‑91 AGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTC > 2:2623780/1‑91 AGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTC > 2:3450071/1‑91 AGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTC < 2:2341443/91‑1 AGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTC < 2:417685/91‑1 AGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTC > 2:691955/1‑91 GCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCA < 1:3910717/91‑1 GCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCA > 2:3886559/1‑91 GCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCA < 1:6286825/91‑1 GCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCA < 2:2096681/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA > 1:1657217/1‑91 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 1:1527258/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 1:1889005/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 1:109131/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA > 1:2631395/1‑91 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 2:5415581/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA > 2:4251225/1‑91 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 2:1835199/91‑1 CTAGGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCTCCCTCAAGATGAGATTGCCCAACTTCGGTTATAAGATCCCTCAA < 2:570593/91‑1 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA < 1:2671638/91‑1 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA > 2:5310817/1‑91 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA < 1:487562/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG > 1:2269620/1‑91 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG < 1:1279296/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTT > 1:1728634/1‑70 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTT < 2:1728634/70‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGACTTCCCAACTTCGGTTATAAGATCCCTCCAAG > 2:5595375/1‑91 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA < 1:5584415/91‑1 GTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT > 2:503490/1‑91 GTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT > 1:1410182/1‑91 GTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT > 1:6745465/1‑91 ATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/517536‑517440‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctatgTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT > USA300TCH1516_ALE/517458‑517547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |