BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	556088 =	389 (1.090)	82 (0.240) +TA	15/156	NT	17.8%	intergenic (+556/‑129)	lysS/USA300TCH1516_00497	Lysine‑‑tRNA ligase/tRNA‑Val
*	?	USA300TCH1516_ALE	561925 =	NA (NA)	82 (0.240) +TA	15/156	NT	17.8%	intergenic (+3138/+664)	USA300TCH1516_00505/gabR	tRNA‑Ile/HTH‑type transcriptional regulatory protein GabR

Only 100 of 654 total aligned reads displayed.

AAAGCTGATGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACG  >  USA300TCH1516_ALE/555998‑556177

aaaGCTGATGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTAtttt                                                                                           <  1:6928154/91‑1 (MQ=255)

   gCTGATGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTc                                                                                        <  1:28267/91‑1 (MQ=255)

   gCTGATGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTc                                                                                        >  1:79057/1‑91 (MQ=255)

    cTGATGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCt                                                                                       <  2:3043808/91‑1 (MQ=255)

     tGATGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTg                                                                                      <  1:5296307/91‑1 (MQ=255)

     tGATGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTg                                                                                      <  2:1984022/91‑1 (MQ=255)

     tGATGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTg                                                                                      <  1:3667166/91‑1 (MQ=255)

     tGATGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTg                                                                                      >  2:5477270/1‑91 (MQ=255)

      gATGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTGTCATGAATAAGTAAGTTATTTTGTCTgg                                                                                     <  2:3583289/91‑1 (MQ=255)

      gATGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTgg                                                                                     <  2:1751377/91‑1 (MQ=255)

       aTGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGt                                                                                    >  1:4738438/1‑91 (MQ=255)

       aTGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGt                                                                                    >  2:4067246/1‑91 (MQ=255)

        tgtgACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTg                                                                                   >  1:2911524/1‑91 (MQ=255)

            aCAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACta                                                                               >  2:6272114/1‑91 (MQ=255)

               aaGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAg                                                                            <  1:1856432/91‑1 (MQ=255)

               aaGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAg                                                                            <  2:2668308/91‑1 (MQ=255)

                 gTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCa                                                                          >  2:5430221/1‑91 (MQ=255)

                    tACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAagg                                                                       <  2:729811/91‑1 (MQ=255)

                    tACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAagg                                                                       <  2:1377825/91‑1 (MQ=255)

                    tACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAagg                                                                       >  2:6341776/1‑91 (MQ=255)

                    tACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGACTGGTGACTATCGCAagg                                                                       >  1:5868406/1‑91 (MQ=255)

                     aCATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAagga                                                                      >  2:6547111/1‑91 (MQ=255)

                      cATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAaggag                                                                     <  1:2093962/91‑1 (MQ=255)

                      cATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAaggag                                                                     <  1:1027273/91‑1 (MQ=255)

                       aTCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAaggagg                                                                    >  2:5948226/1‑91 (MQ=255)

                         cAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTc                                                                  <  1:1266918/91‑1 (MQ=255)

                           aaGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTcac                                                                <  1:1062297/91‑1 (MQ=255)

                              tgtAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACAcc                                                             <  2:3171530/91‑1 (MQ=255)

                               gtAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCt                                                            <  1:2391620/91‑1 (MQ=255)

                                tAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGTAGGTCACACCTg                                                           >  2:4472525/1‑91 (MQ=255)

                                tAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGTGGTCACACCTg                                                           <  2:2512828/91‑1 (MQ=255)

                                tAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTg                                                           <  2:3976236/91‑1 (MQ=255)

                                tAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTg                                                           <  2:2911524/91‑1 (MQ=255)

                                tAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTg                                                           >  2:3298387/1‑91 (MQ=255)

                                  aaaTTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGtt                                                         >  2:1561346/1‑91 (MQ=255)

                                    aTTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTcc                                                       <  2:2298679/91‑1 (MQ=255)

                                      tAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCa                                                     <  1:5753616/91‑1 (MQ=255)

                                      tAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCa                                                     <  1:622408/91‑1 (MQ=255)

                                      tAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCa                                                     <  1:3271660/91‑1 (MQ=255)

                                        aCTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATg                                                   <  1:1624487/91‑1 (MQ=255)

                                        aCTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATg                                                   >  2:5691569/1‑91 (MQ=255)

                                        aCTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGGTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATg                                                   >  2:6793630/1‑91 (MQ=255)

                                         cTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGc                                                  >  2:538731/1‑91 (MQ=255)

                                           aTTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCg                                                <  1:6077833/91‑1 (MQ=255)

                                                aCCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAacac                                           <  2:3779879/91‑1 (MQ=255)

                                                aCCGTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAacac                                           <  1:6503708/91‑1 (MQ=255)

                                                   ttattaATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGa                                        <  1:2516610/91‑1 (MQ=255)

                                                    tattaATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAg                                         <  1:5607765/89‑1 (MQ=255)

                                                        aattaaGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTa                                   >  2:579979/1‑91 (MQ=255)

                                                            aaGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCt                               <  1:4451140/91‑1 (MQ=255)

                                                                    aTCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCg                       <  1:1381489/91‑1 (MQ=255)

                                                                      atgtaatttatacattcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTc                     <  2:1155409‑M1/71‑1 (MQ=255)

                                                                       tgtaatttatacattcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCg                    <  2:5153627‑M1/72‑1 (MQ=255)

                                                                        tGAATAAGTAAGTTATTTTGTCTGGTGACTAAAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGa                   >  1:6817442/1‑91 (MQ=255)

                                                                          aaTAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATg                 <  1:3962242/91‑1 (MQ=255)

                                                                            taagtaagTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGt               <  1:5987505/91‑1 (MQ=255)

                                                                             aagtaagtTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTa              <  1:412161/91‑1 (MQ=255)

                                                                               gtaagtTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTCCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGt            <  1:3329631/91‑1 (MQ=255)

                                                                                tacattcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTc           >  1:972763‑M1/11‑91 (MQ=255)

                                                                                tacattcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTc           >  2:5249863‑M1/11‑91 (MQ=255)

                                                                                 acattcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCg          <  2:4915661‑M1/82‑1 (MQ=255)

                                                                                  cattcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGa         <  2:4339517‑M1/83‑1 (MQ=255)

                                                                                  cattcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGa         <  1:2281926‑M1/83‑1 (MQ=255)

                                                                                  cattcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGa         <  2:1892959‑M1/83‑1 (MQ=255)

                                                                                  cattcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGa         <  1:5419025‑M1/83‑1 (MQ=255)

                                                                                  agtTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGa         >  2:6095158/1‑91 (MQ=39)

                                                                                  agtTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGa         >  2:870657/1‑91 (MQ=39)

                                                                                   attcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGaa        <  1:3538120‑M1/84‑1 (MQ=255)

                                                                                   attcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGaa        <  2:3686001‑M1/84‑1 (MQ=255)

                                                                                   attcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGaa        <  2:389463‑M1/84‑1 (MQ=255)

                                                                                   attcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGaa        <  1:4860126‑M1/84‑1 (MQ=255)

                                                                                   attcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGaa        <  1:1453897‑M1/84‑1 (MQ=255)

                                                                                   attcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGaa        <  2:5003327‑M1/84‑1 (MQ=255)

                                                                                   attcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGaa        <  1:6340167‑M1/84‑1 (MQ=255)

                                                                                    ttcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGa         >  2:1507858‑M1/7‑89 (MQ=255)

                                                                                    ttcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAAc       <  2:5516185‑M1/85‑1 (MQ=255)

                                                                                    ttcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAAc       <  2:129287‑M1/85‑1 (MQ=255)

                                                                                    ttATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAAc       >  2:3400881/1‑91 (MQ=37)

                                                                                     tcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACt      >  2:4830367‑M1/6‑91 (MQ=255)

                                                                                     tcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACt      >  1:264717‑M1/6‑91 (MQ=255)

                                                                                     tcataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACt      >  2:213651‑M1/6‑91 (MQ=255)

                                                                                      cataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGATCACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACtt     >  2:4713929‑M1/5‑91 (MQ=255)

                                                                                      cataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACtt     <  1:5959480‑M1/87‑1 (MQ=255)

                                                                                      cataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACtt     >  2:5598509‑M1/5‑91 (MQ=255)

                                                                                      aTTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACtt     <  1:6694231/91‑1 (MQ=34)

                                                                                      aTTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACtt     <  1:4923786/91‑1 (MQ=34)

                                                                                       ataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTa    >  1:5222079‑M1/4‑91 (MQ=255)

                                                                                       ataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTa    <  2:2069663‑M1/88‑1 (MQ=255)

                                                                                       ataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTa    <  1:435622‑M1/88‑1 (MQ=255)

                                                                                       ataTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTa    <  1:3833298‑M1/88‑1 (MQ=255)

                                                                                        tttGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTAc   >  2:6458189/1‑91 (MQ=32)

                                                                                        taTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTAc   <  1:1721012‑M1/89‑1 (MQ=255)

                                                                                        taTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTAc   >  1:1198026‑M1/3‑91 (MQ=255)

                                                                                        taTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTAc   >  1:3066505‑M1/3‑91 (MQ=255)

                                                                                        taTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTAc   >  1:3175030‑M1/3‑91 (MQ=255)

                                                                                        taTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTAc   <  2:4610326‑M1/89‑1 (MQ=255)

                                                                                        taTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTAc   <  2:421154‑M1/89‑1 (MQ=255)

                                                                                         ttGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACg  <  1:6272114/91‑1 (MQ=31)

                                                                                         aTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACg  >  1:2736465‑M1/2‑91 (MQ=255)

                                                                                         aTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACg  >  2:242985‑M1/2‑91 (MQ=255)

AAAGCTGATGTGACAAAGTTTACATCAAAGTGTAAAATTAACTATTGCACCTTATTAATTAAGCGTGTATCATGAATAAGTAAGTTATTTTGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACG  >  USA300TCH1516_ALE/555998‑556177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.