BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2001795 =	NA (NA)	31 (0.100)	14/140	NT	NA	intergenic (‑18/+2366)	USA300TCH1516_01884/perR	tRNA‑Ile/Peroxide‑responsive repressor PerR
*	?	USA300TCH1516_ALE	2179784 =	NA (NA)	31 (0.100)	14/140	NT	NA	intergenic (+3546/+1749)	ilvA/USA300TCH1516_02069	L‑threonine dehydratase biosynthetic IlvA/tRNA‑Gly

Only 100 of 324 total aligned reads displayed.

GGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCA  >  USA300TCH1516_ALE/2001705‑2001883

 ggCCTAAGTGGCCTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTCACCAGCTGAGCTATAGGCCCATTAATTTGAATGaacaac                                                                                         <  2:2081888/91‑2 (MQ=255)

 ggCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGaacaaa                                                                                         <  1:6009365/91‑1 (MQ=255)

 ggCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGaacaaa                                                                                         >  2:3315694/1‑91 (MQ=255)

     tAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACAtt                                                                                     <  1:343060/91‑1 (MQ=255)

       aGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCa                                                                                   >  1:4073060/1‑91 (MQ=255)

        gTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCaa                                                                                  >  1:5723820/1‑91 (MQ=255)

        gTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCaa                                                                                  >  2:2583594/1‑91 (MQ=255)

          ggACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCAATAATTTGAATGAACAAACATTCaaaa                                                                                >  2:6886135/1‑91 (MQ=255)

           gACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCTCATTAATTTGAATGAACAAACATTCAAAAc                                                                               <  2:18104/91‑1 (MQ=255)

           gACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAAc                                                                               <  1:2168873/91‑1 (MQ=255)

           gACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAAc                                                                               <  2:5602762/91‑1 (MQ=255)

            aCTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTACTTTGAATGAACAAACATTCAAAACt                                                                              >  2:2048723/1‑91 (MQ=255)

             cTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTg                                                                             <  1:490070/91‑1 (MQ=255)

             cTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTg                                                                             >  2:1213171/1‑91 (MQ=255)

             cTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTg                                                                             >  1:3923618/1‑91 (MQ=255)

              tCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGa                                                                            >  2:1147714/1‑91 (MQ=255)

              tCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGa                                                                            >  1:5944820/1‑91 (MQ=255)

               cGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGaa                                                                           <  2:4577351/91‑1 (MQ=255)

               cGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGaa                                                                           >  2:2299450/1‑91 (MQ=255)

                  accaccGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATAc                                                                        <  2:3598221/91‑1 (MQ=255)

                    caccGACCTCACGCTTATCAGGCATGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAAGATTCAAAACTGCATACaa                                                                      >  1:5834734/1‑91 (MQ=18)

                      ccGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAata                                                                    <  1:1033994/91‑1 (MQ=255)

                       cGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAatat                                                                   >  2:6246653/1‑91 (MQ=255)

                       cGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAatat                                                                   >  1:6915101/1‑91 (MQ=255)

                        gACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCCACACTGAATACAATATg                                                                  >  2:136046/1‑91 (MQ=255)

                         aCCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGt                                                                 >  1:603436/1‑91 (MQ=255)

                          ccTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTc                                                                <  1:5657782/91‑1 (MQ=255)

                          ccTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTc                                                                >  2:2989517/1‑91 (MQ=255)

                          ccTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTc                                                                >  2:5136635/1‑91 (MQ=255)

                           cTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCa                                                               <  2:2843472/91‑1 (MQ=255)

                           cTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCa                                                               <  1:2677491/91‑1 (MQ=255)

                              aCGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGt                                                            >  1:2038971/1‑91 (MQ=255)

                               cGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGtt                                                           >  2:1727587/1‑91 (MQ=255)

                                   tATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTc                                                       <  2:1281770/91‑1 (MQ=255)

                                   tATCAGGCGTGCGCTCTAACCAGCCGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTc                                                       <  1:6616528/91‑1 (MQ=255)

                                    aTCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTcc                                                      <  2:2729106/91‑1 (MQ=255)

                                    aTCAGGCGTGCGCCCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTcc                                                      >  1:2456129/1‑91 (MQ=255)

                                     gcAGGCGTGCGCTCTAACCAGCTGAGCTATGGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCg                                                     <  2:5025263/90‑1 (MQ=255)

                                      cAGGCGTGCGCTCTAACCAGCTGAGCTATAGGTCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGc                                                    >  2:2773890/1‑91 (MQ=255)

                                      cAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGc                                                    >  2:3923314/1‑91 (MQ=255)

                                       tggCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCa                                                   <  1:2806536/90‑1 (MQ=255)

                                       aGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCa                                                   <  1:2921396/91‑1 (MQ=255)

                                       aGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCa                                                   >  2:3274635/1‑91 (MQ=255)

                                       aGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCa                                                   <  1:4642613/91‑1 (MQ=255)

                                         gCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCAtc                                                 >  2:3433037/1‑91 (MQ=255)

                                         gCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCAtc                                                 <  2:6409740/91‑1 (MQ=255)

                                          cGTGCGCTATAACCAGCGCAGCTATAGGCCCATTAATTTTAATGAACAAACATTCAAAACTGAATAAAATATGTCACGTTATTCCGCAtct                                                <  2:3267315/91‑1 (MQ=17)

                                             gcgcTCTAACCAGCTGAGCTATAGGCCCATTGATGTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATACCGCAtcttct                                             <  2:5482974/91‑1 (MQ=255)

                                              cgcTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTg                                            >  1:5431480/1‑91 (MQ=255)

                                              cgcTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTg                                            >  1:943829/1‑91 (MQ=255)

                                               gcTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCAtcttcttc                                           <  2:77360/91‑3 (MQ=255)

                                               gcTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCAtcttcttc                                           <  1:2850080/91‑3 (MQ=255)

                                                ctctAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTgaa                                          <  2:5723820/91‑1 (MQ=255)

                                                 tctAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCAtcttcttcag                                         <  1:1411797/91‑5 (MQ=255)

                                                 tctAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCAtcttcttcag                                         <  1:4775743/91‑5 (MQ=255)

                                                  ctAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTgaaga                                        <  2:1934497/91‑1 (MQ=255)

                                                     aCCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAagaaga                                     <  1:4340859/91‑1 (MQ=255)

                                                         gCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGtt                                 >  2:5990940/1‑91 (MQ=255)

                                                         gCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGtt                                 >  1:5060973/1‑91 (MQ=255)

                                                            gAGCTATCGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCg                              >  2:369359/1‑91 (MQ=255)

                                                             aGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGa                             <  1:1837357/91‑1 (MQ=255)

                                                             aGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGa                             >  2:5874041/1‑91 (MQ=255)

                                                               cTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAat                           <  2:4896951/91‑1 (MQ=255)

                                                                tataGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAata                          <  1:3686544/91‑1 (MQ=255)

                                                                   aGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAatatat                       >  1:1073608/1‑91 (MQ=255)

                                                                   aGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAatatat                       >  2:1862103/1‑91 (MQ=255)

                                                                    ggCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATc                      >  1:6086791/1‑91 (MQ=255)

                                                                     gCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATcc                     >  2:6176139/1‑91 (MQ=255)

                                                                     gCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATcc                     <  1:3159791/91‑1 (MQ=255)

                                                                      cccATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCt                    <  2:3821050/91‑1 (MQ=255)

                                                                      cccATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCt                    <  1:176278/91‑1 (MQ=255)

                                                                      cccATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCt                    <  2:5361530/91‑1 (MQ=255)

                                                                      cccATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCt                    >  1:1949089/1‑91 (MQ=255)

                                                                      cccATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCt                    >  2:6693729/1‑91 (MQ=255)

                                                                      cccATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCt                    <  1:6696834/91‑1 (MQ=255)

                                                                       ccATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCtt                   <  1:5882974/91‑1 (MQ=255)

                                                                        cATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTa                  >  2:4021439/1‑91 (MQ=255)

                                                                        cATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTa                  <  1:6205525/91‑1 (MQ=255)

                                                                        cATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTa                  >  2:1518396/1‑91 (MQ=255)

                                                                          ttAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGa                >  2:3686440/1‑91 (MQ=255)

                                                                            aaTTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGaaa              >  2:6853736/1‑91 (MQ=255)

                                                                            aaTTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGaaa              >  2:2187445/1‑91 (MQ=255)

                                                                             aTTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAag             <  2:4071792/91‑1 (MQ=255)

                                                                             aTTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAag             <  2:210424/91‑1 (MQ=255)

                                                                              tttGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAat                           <  1:117864/76‑1 (MQ=255)

                                                                              tttGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAagg            >  1:1019039/1‑91 (MQ=255)

                                                                              tttGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAagg            >  1:2413122/1‑91 (MQ=255)

                                                                              tttGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAagg            >  1:300420/1‑91 (MQ=255)

                                                                              tttGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAagg            >  2:3526793/1‑91 (MQ=255)

                                                                              tttGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTACTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAagg            >  1:5261562/1‑91 (MQ=255)

                                                                               ttGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAagga           <  1:6409602/91‑1 (MQ=255)

                                                                                tgaatgaaCAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAaggag          >  1:758906/1‑91 (MQ=40)

                                                                                 gaatgaaCAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAaggagg         <  2:47376/91‑1 (MQ=39)

                                                                                  aatgaaCAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGt        >  2:4321170/1‑91 (MQ=38)

                                                                                    tgaaCAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGa      >  1:3529561/1‑91 (MQ=35)

                                                                                     gaaCAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGAt     <  2:4167639/91‑1 (MQ=34)

                                                                                      aacaaacaTTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATc    >  2:3112944/1‑91 (MQ=33)

                                                                                      aacaaacaTTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATc    >  2:2562601/1‑91 (MQ=33)

                                                                                       acaaacaTTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATcc   <  1:4001405/91‑1 (MQ=32)

                                                                                        caaacaTTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCa  >  2:4423625/1‑91 (MQ=31)

GGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCA  >  USA300TCH1516_ALE/2001705‑2001883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.