BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	221178 =	293 (0.820)	16 (0.050)	11/146	NT	5.6%	intergenic (‑224/+50)	ipdC/ptsG_1	Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component
*	?	USA300TCH1516_ALE	221218 =	268 (0.820)	16 (0.050)	11/146	NT	5.6%	intergenic (‑264/+10)	ipdC/ptsG_1	Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component

Only 100 of 439 total aligned reads displayed.

AAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTCC  >  USA300TCH1516_ALE/221128‑221308

aaGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTta                                                                                            >  1:1010236/1‑91 (MQ=255)

aaGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTta                                                                                            >  1:3858009/1‑91 (MQ=255)

aaGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTta                                                                                            >  1:5924667/1‑91 (MQ=255)

 aGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtat                                                                                           >  1:5501054/1‑91 (MQ=255)

 aGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtat                                                                                           >  2:329598/1‑91 (MQ=255)

  ggggAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtata                                                                                          >  2:19706/1‑91 (MQ=255)

  ggggAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtata                                                                                          >  1:6035410/1‑91 (MQ=255)

     gagaGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTa                                                                                       >  1:4423361/1‑91 (MQ=255)

     gagaGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTa                                                                                       <  2:410002/91‑1 (MQ=255)

      agagCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTaa                                                                                      <  1:1961547/91‑1 (MQ=255)

        agCGAACTATCAATGATGCTGCAAAATACAATATCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTGTATAGTAAGc                                                                                    >  1:6962431/1‑91 (MQ=255)

        agCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGc                                                                                    <  1:6898067/91‑1 (MQ=255)

         gCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCa                                                                                   <  2:1033736/91‑1 (MQ=255)

         gCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCa                                                                                   >  1:4105467/1‑91 (MQ=255)

         gCGAACTATCAATGATGCTGCAAAATACAATAGAAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCa                                                                                   <  2:4947573/91‑1 (MQ=255)

           gAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatt                                                                                 <  1:6333640/91‑1 (MQ=255)

            aaCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatta                                                                                >  2:6430594/1‑91 (MQ=255)

            aaCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatta                                                                                >  1:4329684/1‑91 (MQ=255)

             aCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCattat                                                                               >  2:2939097/1‑91 (MQ=255)

               tATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTAttt                                                                             >  1:938308/1‑91 (MQ=255)

                    atgatgCTTCAAAATACAATAAAAAAAAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCtt                                                                        <  2:3270361/91‑1 (MQ=255)

                    atgatgCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCtt                                                                        >  1:6242499/1‑91 (MQ=255)

                       atgCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaa                                                                     >  2:4232070/1‑91 (MQ=255)

                       atgCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaa                                                                     <  2:5939239/91‑1 (MQ=255)

                        tgctgcAAAATACAATAGAAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGCAAGCATTATTTAGCTTCaaa                                                                    <  2:2888503/91‑1 (MQ=255)

                        tgctgcAAAATACAATAACAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaaa                                                                    <  2:3748215/91‑1 (MQ=255)

                        atttgaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaaa                                                                    >  1:740520‑M1/27‑91 (MQ=255)

                         gctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaat                                                                   >  2:1746510/1‑91 (MQ=255)

                         gctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaat                                                                   >  2:4723663/1‑91 (MQ=255)

                          ctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaata                                                                  >  2:4335911/1‑91 (MQ=255)

                          ctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaata                                                                  >  1:4468632/1‑91 (MQ=255)

                          ctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTGTATAGTAAGCATTATTTAGCTGCAaata                                                                  >  2:1519557/1‑91 (MQ=255)

                            gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtat                                                                                           <  1:477218/64‑1 (MQ=255)

                            gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataat                                                                >  1:6189964/1‑91 (MQ=255)

                            gaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAGGGTATACGAACCTGTGTATAGTAAGCATTATTTAGCTTCAaataat                                                                >  2:4654303‑M1/23‑91 (MQ=255)

                               aaaTACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCATCAAATAATTGa                                                             >  2:4488928/1‑91 (MQ=255)

                                aaTACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGAt                                                            >  2:605428/1‑91 (MQ=255)

                                    cAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGcc                                                        >  2:692142/1‑91 (MQ=255)

                                      aTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaa                                                      <  2:6698780/91‑1 (MQ=255)

                                      aTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaa                                                      <  1:1634852/91‑1 (MQ=255)

                                          cAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatga                                                  <  1:2151111/91‑1 (MQ=255)

                                           aaaGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaa                                                 >  1:4880563/1‑91 (MQ=255)

                                             aGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaat                                               <  1:3505250/91‑1 (MQ=255)

                                              gAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATACTTGATCGCCaaatgaaatg                                              >  2:6567522/1‑91 (MQ=255)

                                               aaaaaaCAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGt                                             <  2:6285274/91‑1 (MQ=255)

                                                aaaaaCAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGtt                                            >  1:845049/1‑91 (MQ=255)

                                                aaaaaCAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGtt                                            <  2:3984066/91‑1 (MQ=255)

                                                    ACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTtgcga                                        <  2:2711992‑M1/91‑3 (MQ=255)

                                                    ACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCa                                        <  1:2300399‑M1/91‑1 (MQ=255)

                                                    ACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCa                                        <  1:1228970‑M1/91‑1 (MQ=255)

                                                    ACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCa                                        <  2:2225787‑M1/91‑1 (MQ=255)

                                                     CAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCAt                                       >  2:857731‑M1/1‑91 (MQ=255)

                                                     CAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCAt                                       >  1:5692301‑M1/1‑91 (MQ=255)

                                                     CAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCAt                                       >  1:1404102‑M1/1‑91 (MQ=255)

                                                      AGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATg                                      <  1:5311321‑M1/91‑1 (MQ=255)

                                                       GGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGt                                     >  1:2591954‑M1/1‑91 (MQ=255)

                                                       GGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGt                                     <  1:613902‑M1/91‑1 (MQ=255)

                                                        GCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGtt                                    >  1:2896394‑M1/1‑91 (MQ=255)

                                                          gcgTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCa                                  >  2:511405/1‑91 (MQ=255)

                                                           cgtataccttcataaggtgacgcgcctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAc                                 >  1:1490625‑M2/32‑91 (MQ=255)

                                                           cgTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAc                                 >  1:4177280/1‑91 (MQ=255)

                                                            gTCGCCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAcc                                <  1:6504536/91‑1 (MQ=255)

                                                            gTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAcc                                <  2:5362443/91‑1 (MQ=255)

                                                            gTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAcc                                >  1:1854425/1‑91 (MQ=255)

                                                            gTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAcc                                <  2:3830422/91‑1 (MQ=255)

                                                            gTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAcc                                >  1:3199631/1‑91 (MQ=255)

                                                             tCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCt                               <  1:4662973/91‑1 (MQ=255)

                                                             tCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCt                               <  2:1568821/91‑1 (MQ=255)

                                                               aCCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTg                             >  1:5799647/1‑91 (MQ=255)

                                                                ccTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGt                            <  1:3251262/91‑1 (MQ=255)

                                                                  ttATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGttt                          <  1:2999418/91‑1 (MQ=255)

                                                                  ttATGAAAGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGttt                          <  2:4779807/91‑1 (MQ=255)

                                                                   ttcataaggtgacgcgcctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTa                         >  2:1280594‑M2/24‑91 (MQ=255)

                                                                      gAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTaaaa                      <  2:2554057/91‑1 (MQ=255)

                                                                      ataaggtgacgcgcctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTaaaa                      <  2:741474‑M2/71‑1 (MQ=255)

                                                                          gTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCaa                  >  1:5390804/1‑91 (MQ=255)

                                                                           tataCGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAg                 <  2:5295595/91‑1 (MQ=255)

                                                                               cGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGttt             >  2:3639354/1‑91 (MQ=255)

                                                                               cGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGttt             >  2:5724967/1‑91 (MQ=255)

                                                                               cGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGttt             >  1:5964322/1‑91 (MQ=255)

                                                                               cGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGttt             >  2:206224/1‑91 (MQ=255)

                                                                                gCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTg            <  1:6689421/91‑1 (MQ=255)

                                                                                  aCCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTa          <  1:1123137/91‑1 (MQ=255)

                                                                                   cctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTaa         >  2:5050727‑M2/8‑91 (MQ=255)

                                                                                   cctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTaa         >  2:5224917‑M2/8‑91 (MQ=255)

                                                                                   cctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTaa         <  1:6179585‑M2/84‑1 (MQ=255)

                                                                                   cctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTaa         <  1:2687432‑M2/84‑1 (MQ=255)

                                                                                   cctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTaa         <  2:3519720‑M2/84‑1 (MQ=255)

                                                                                   cctgtgtATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTaa         <  2:5892680‑M2/84‑1 (MQ=255)

                                                                                     tgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATg       >  1:3144725‑M2/6‑91 (MQ=255)

                                                                                     tgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATg       >  1:2417674‑M2/6‑91 (MQ=255)

                                                                                      gtttATAGTAAGCATTATTTAGCTTCCAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGGTTGTAATGt      >  2:5609067‑M2/5‑91 (MQ=255)

                                                                                      gtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGt      <  1:4965170‑M2/87‑1 (MQ=255)

                                                                                      gtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGt      <  2:2452313‑M2/87‑1 (MQ=255)

                                                                                      gtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGt      <  2:1328162‑M2/87‑1 (MQ=255)

                                                                                       tttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGtt     <  2:3082062‑M2/88‑1 (MQ=255)

                                                                                       tttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGtt     >  2:2596905‑M2/4‑91 (MQ=255)

                                                                                         tATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTc   >  1:3752992‑M2/2‑91 (MQ=255)

                                                                                         tATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTc   >  1:6761772‑M2/2‑91 (MQ=255)

                                                                                          ataGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTcc  <  1:3625156/91‑1 (MQ=255)

AAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTCC  >  USA300TCH1516_ALE/221128‑221308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.