BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 775565	276 (0.770)	16 (0.050)	9/142	NT	5.8%	coding (549/1182 nt)	nagA	N‑acetylglucosamine‑6‑phosphate deacetylase
*	?	USA300TCH1516_ALE	= 775573	278 (0.880)	16 (0.050)	9/142	NT	5.8%	coding (557/1182 nt)	nagA	N‑acetylglucosamine‑6‑phosphate deacetylase

Only 100 of 368 total aligned reads displayed.

ACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCAGTTGAAGC  >  USA300TCH1516_ALE/775483‑775663

aCGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGa                                                                                            >  1:6861518/1‑91 (MQ=255)

 cGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGAGTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAa                                                                                           <  1:4369976‑M2/91‑2 (MQ=255)

 cGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAa                                                                                           >  2:1516792‑M2/1‑90 (MQ=255)

  gTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAag                                                                                          <  1:3333601‑M2/91‑3 (MQ=255)

   ttGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAagg                                                                                         >  1:1723896‑M2/1‑88 (MQ=255)

   ttGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAagg                                                                                         <  1:6462402‑M2/91‑4 (MQ=255)

   ttGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAagg                                                                                         <  1:2959766‑M2/91‑4 (MQ=255)

       aCGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAaggtgca                                                                                     >  2:6597936‑M2/1‑84 (MQ=255)

        cGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAaggtgcaa                                                                                    >  2:5164048‑M2/1‑83 (MQ=255)

        cGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAaggtgcaa                                                                                    >  2:40042‑M2/1‑83 (MQ=255)

           ccATTTATCGCTAAAATTAACCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAaag                                                                                 <  1:313100/91‑1 (MQ=255)

           ccATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAaag                                                                                 <  1:4662577/91‑1 (MQ=255)

            cATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAaaga                                                                                >  2:3909034/1‑91 (MQ=255)

            cATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAaaga                                                                                >  2:1206909/1‑91 (MQ=255)

              tttATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAaagaag                                                                              <  1:3670534/91‑1 (MQ=255)

                tATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAgcg                                                                            >  1:793377/1‑91 (MQ=255)

                tATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAgcg                                                                            <  2:5395405/91‑1 (MQ=255)

                tATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAgcg                                                                            <  1:5688333/91‑1 (MQ=255)

                 aTCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAgcgc                                                                           <  1:4885367/91‑1 (MQ=255)

                 aTCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAgcgc                                                                           <  1:1957302/91‑1 (MQ=255)

                  tCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCt                                                                          >  2:3547439/1‑91 (MQ=255)

                    gATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAaagaag                                                                              >  2:2879867/1‑85 (MQ=255)

                    gATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTg                                                                        >  1:1848258/1‑91 (MQ=255)

                    gATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTg                                                                        >  1:4973676/1‑91 (MQ=255)

                    gATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTg                                                                        >  2:5081218/1‑91 (MQ=255)

                    gATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTg                                                                        >  1:6231258/1‑91 (MQ=255)

                    gATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAAGAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTg                                                                        >  1:224921/1‑91 (MQ=255)

                     aTAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGa                                                                       <  1:739048/91‑1 (MQ=255)

                     aTAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGa                                                                       >  2:267153/1‑91 (MQ=255)

                      tAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGaa                                                                      >  1:4461731/1‑91 (MQ=255)

                          aTTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGt                                                                  >  1:2905743/1‑91 (MQ=255)

                           ttAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGta                                                                 <  2:1319673/91‑1 (MQ=255)

                             aaaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGtata                                                               >  2:3400631/1‑91 (MQ=255)

                             aaaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGtata                                                               >  1:153926/1‑91 (MQ=255)

                             aaaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGtata                                                               >  1:5127001/1‑91 (MQ=255)

                             aaaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGtata                                                               <  1:2317383/91‑1 (MQ=255)

                              aaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATaa                                                              >  1:1081985/1‑91 (MQ=255)

                              aaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATaa                                                              >  2:4130195/1‑91 (MQ=255)

                              aaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATaa                                                              >  2:2449406/1‑91 (MQ=255)

                              aaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATaa                                                              >  2:2792365/1‑91 (MQ=255)

                                cATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGtata                                                               <  2:183163/88‑1 (MQ=255)

                                cATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAg                                                            >  2:557108/1‑91 (MQ=255)

                                cATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAg                                                            >  1:1337362/1‑91 (MQ=255)

                                 aTTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGa                                                           >  1:563180/1‑91 (MQ=255)

                                   tttCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATg                                                         >  2:490863/1‑91 (MQ=255)

                                    ttCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCCGAAGCCGAAGGTGCAAAAGAAGCGCTTGAAACGTACAGAGCTGa                                                        >  2:370314/1‑91 (MQ=255)

                                     tCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGAc                                                       <  1:4767985/91‑1 (MQ=255)

                                     tCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGAc                                                       <  2:5021380/91‑1 (MQ=255)

                                      cAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACa                                                      <  1:5983280/91‑1 (MQ=255)

                                       aaGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACat                                                     <  2:4706295/91‑1 (MQ=255)

                                        agagACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACatt                                                    >  2:3561680/1‑91 (MQ=255)

                                         gagaCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACatta                                                   <  2:6216406/91‑1 (MQ=255)

                                          agaCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACattat                                                  >  1:6599183/1‑91 (MQ=255)

                                           gaCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACattatt                                                 <  2:549505/91‑1 (MQ=255)

                                            aCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttt                                                <  1:2856884/91‑1 (MQ=255)

                                             cTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAtttt                                               <  1:2098371/91‑1 (MQ=255)

                                             cTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAtttt                                               >  2:2273268/1‑91 (MQ=255)

                                              tGCTAATGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttttt                                              <  2:6395816/91‑1 (MQ=255)

                                              tGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttttt                                              >  1:4583321/1‑91 (MQ=255)

                                              tGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttttt                                              <  2:1707136/91‑1 (MQ=255)

                                              tGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttttt                                              <  1:553610/91‑1 (MQ=255)

                                              tGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttttt                                              <  1:5043627/91‑1 (MQ=255)

                                                  aaCGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCaa                                          >  2:844297/1‑91 (MQ=255)

                                                  aaCGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCaa                                          <  1:964675/91‑1 (MQ=255)

                                                   aCGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAAt                                         <  2:1438926/91‑1 (MQ=255)

                                                    cGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAAtt                                        <  2:4339484/91‑1 (MQ=255)

                                                     ggATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAAt                                         >  2:3104629/1‑89 (MQ=255)

                                                     ggATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTg                                       <  2:2965311/91‑1 (MQ=255)

                                                      gATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTgg                                      <  2:5629627/91‑1 (MQ=255)

                                                         taataaAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCTATTTGTct                                   >  2:667382/1‑90 (MQ=255)

                                                          aataaAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCAt                                  <  2:6822975/91‑1 (MQ=255)

                                                          aataaAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCAt                                  <  1:3237831/91‑1 (MQ=255)

                                                          aataaAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCAt                                  >  1:3041256/1‑91 (MQ=255)

                                                          aataaAGATTATGACGTTTGCACATGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCAt                                  >  1:5449032/1‑91 (MQ=255)

                                                            taaAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATAc                                >  2:30334/1‑91 (MQ=255)

                                                            taaAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATAc                                <  1:3267737/91‑1 (MQ=255)

                                                            taaAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATAc                                <  1:1206909/91‑1 (MQ=255)

                                                              aaGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAg                              >  1:4182590/1‑91 (MQ=255)

                                                               aGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACaat                             <  2:3269304/91‑3 (MQ=255)

                                                               aGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGt                             <  1:3437924/91‑1 (MQ=255)

                                                                 aTTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAg                           <  2:1981254/91‑1 (MQ=255)

                                                                  ttATGATGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGc                          <  1:5847320/91‑1 (MQ=255)

                                                                  ttATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGc                          <  1:6749215/91‑1 (MQ=255)

                                                                  ttATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGc                          >  2:3852869/1‑91 (MQ=255)

                                                                  ttATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGc                          <  2:2612615/91‑1 (MQ=255)

                                                                       aCGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCAGACAGTAGCAACAt                     <  2:4161424/91‑1 (MQ=255)

                                                                        cGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATa                    <  2:1743312/91‑1 (MQ=255)

                                                                          tttGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACg                  <  2:1044417/91‑1 (MQ=255)

                                                                            tGCACCTGAAGTTGTaggtgcaaacgtcataatctttattaatccgttagcagtctcttgaaaatgtttaattttatcgataaatgggcgt                <  2:4504863‑M2/91‑77 (MQ=255)

                                                                              cACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACgaaga              <  1:4004314/91‑1 (MQ=255)

                                                                               aCCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACgaagaa             <  1:2267250/91‑1 (MQ=255)

                                                                               aCCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACgaagaa             <  1:2643627/91‑1 (MQ=255)

                                                                                ccTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGaagaag            <  2:6039533/91‑1 (MQ=255)

                                                                                ccTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGaagaag            <  2:5871637/91‑1 (MQ=255)

                                                                                ccTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGaagaag            <  1:6127491/91‑1 (MQ=255)

                                                                                  tGAAGTTGAaggtgcaaacgtcataatctttattaatccgttagccgtctcttgaaaatgtttaattttatcgataaattggcgtacaacg          <  2:2360792‑M2/91‑83 (MQ=255)

                                                                                  tGAAGTTGAaggtgcaaacgtcataatctttattaatccgttagcagtctcttgaaaatgtttaattttatcgataaatgggcgtacaacg          <  1:2480718‑M2/91‑83 (MQ=255)

                                                                                    aaGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCAGt        <  2:2135853/91‑1 (MQ=255)

                                                                                    aaGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCAGt        >  2:70166/1‑91 (MQ=255)

                                                                                       ttGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCAGTTGa     >  2:6863218/1‑91 (MQ=255)

ACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTGAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCAGTTGAAGC  >  USA300TCH1516_ALE/775483‑775663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.