BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1901318	299 (0.840)	20 (0.060)	12/142	NT	6.6%	intergenic (‑314/‑209)	USA300HOU_RS09405/sdpR	hypothetical protein/Transcriptional repressor SdpR
*	?	USA300TCH1516_ALE	= 1901341	305 (0.960)	20 (0.060)	12/142	NT	6.6%	intergenic (‑337/‑186)	USA300HOU_RS09405/sdpR	hypothetical protein/Transcriptional repressor SdpR

Only 100 of 416 total aligned reads displayed.

TTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAA  >  USA300TCH1516_ALE/1901251‑1901431

   aGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaat                                                                                         <  2:115285‑M2/91‑4 (MQ=255)

   aGTCGTAAAAACAAAGCTTCTTAATCAATACCCGTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaat                                                                                         >  1:2400084‑M2/1‑88 (MQ=255)

     tCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAATATAAATTCAACTAAGGTGATTGGACATACACTCAAGATATGGCTaatca                                                                                       <  2:6491038‑M2/91‑6 (MQ=255)

     tCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatca                                                                                       >  1:4078037‑M2/1‑86 (MQ=255)

      cGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatcac                                                                                      >  2:1346961‑M2/1‑85 (MQ=255)

       gTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatcacc                                                                                     <  1:2978407‑M2/91‑8 (MQ=255)

       gTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatcacc                                                                                     >  2:5363151‑M2/1‑84 (MQ=255)

        tAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatcacct                                                                                    >  1:2923271‑M2/1‑83 (MQ=255)

        tAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatcacct                                                                                    >  2:4814862‑M2/1‑83 (MQ=255)

        tAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatcacct                                                                                    >  1:2866616‑M2/1‑83 (MQ=255)

        aaaaaacAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatcacct                                                                                    >  2:4050743‑M2/2‑83 (MQ=255)

          aaaaCAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCttt                                                                                  <  2:6370178/91‑1 (MQ=255)

           aaaCAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCtttt                                                                                 <  2:274281/91‑1 (MQ=255)

              cAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCa                                                                              <  1:3668229/91‑1 (MQ=255)

               aaaGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCaa                                                                             <  2:564547/91‑1 (MQ=255)

                 aGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                                                           >  2:239743/1‑91 (MQ=255)

                 aGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                                                           >  1:5195695/1‑91 (MQ=255)

                 aGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                                                           >  2:5280311/1‑91 (MQ=255)

                 aGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                                                           >  2:5126399/1‑91 (MQ=255)

                 aGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                                                           >  1:2070976/1‑91 (MQ=255)

                 aGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                                                           >  1:1493565/1‑91 (MQ=255)

                 aGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                                                           >  1:1313727/1‑91 (MQ=255)

                 aGCTTCGTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                                                           <  2:6768766/91‑1 (MQ=255)

                   cttcttAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCa                                                                         <  2:2254675/91‑1 (MQ=255)

                    ttcttAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAg                                                                        <  2:3953140/91‑1 (MQ=255)

                    ttcttAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCAAATCACCTTTTTCAATGCAg                                                                        >  1:3313652/1‑91 (MQ=255)

                     tcttAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGa                                                                       >  1:5971501/1‑91 (MQ=255)

                      cttAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGaa                                                                      >  2:5752276/1‑91 (MQ=255)

                        tAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACa                                                                    <  2:1536653/91‑1 (MQ=255)

                        tAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACa                                                                    <  1:6010562/91‑1 (MQ=255)

                         aaTCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACaa                                                                   >  2:1839413/1‑91 (MQ=255)

                          aTCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACaaa                                                                  >  1:6473569/1‑91 (MQ=255)

                           tCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAag                                                                 <  1:724402/91‑1 (MQ=255)

                            cAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCGAATCACCTTTTTCAATGCAGAACAAaga                                                                <  2:6683942/91‑1 (MQ=255)

                             aaTACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAagag                                                               <  1:4803182/91‑1 (MQ=255)

                             aaTACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAagag                                                               <  1:2488109/91‑1 (MQ=255)

                             aaTACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAagag                                                               <  1:905310/91‑1 (MQ=255)

                                   cTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATAtt                                                         <  1:198365/91‑1 (MQ=255)

                                   cTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATAtt                                                         >  2:4604097/1‑91 (MQ=255)

                                      gATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTg                                                      >  1:6574431/1‑91 (MQ=255)

                                          aCAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaaa                                                  <  2:6200282/91‑1 (MQ=255)

                                           cAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaaaa                                                 >  1:51215/1‑91 (MQ=255)

                                           cAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaaaa                                                 <  1:3474067/91‑1 (MQ=255)

                                            aaaaTAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTACTCACATTTTTCAATGCAGCACCAAGAGTATATTTTGCCAAAt                                                >  2:3465396/1‑91 (MQ=255)

                                                    ttCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCt                                        <  2:5235829/91‑1 (MQ=255)

                                                    ttCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCt                                        >  2:4630825/1‑91 (MQ=255)

                                                    ttCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCt                                        <  2:6860617/91‑1 (MQ=255)

                                                     tCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCta                                       >  2:2632421/1‑91 (MQ=255)

                                                      cAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCtat                                      >  1:950727/1‑91 (MQ=255)

                                                      cAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCtat                                      >  1:5411319/1‑91 (MQ=255)

                                                      cAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCtat                                      <  2:5486541/91‑1 (MQ=255)

                                                      cAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCtat                                      >  2:211127/1‑91 (MQ=255)

                                                       aaCTAAGGTGGTTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCtata                                     <  2:5569191/91‑1 (MQ=255)

                                                       aaCTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCtata                                     <  1:5716164/91‑1 (MQ=255)

                                                       aaCTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCtata                                     <  2:6067764/91‑1 (MQ=255)

                                                          tAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAAtt                                  <  2:931891/91‑1 (MQ=255)

                                                          tAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAAtt                                  <  2:1983016/91‑1 (MQ=255)

                                                           aaGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAAttt                                 >  1:5028763/1‑91 (MQ=255)

                                                           aaGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAAttt                                 <  1:6074892/91‑1 (MQ=255)

                                                           aaGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAAttt                                 <  2:3661421/91‑1 (MQ=255)

                                                            aGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTa                                >  1:2661394/1‑91 (MQ=255)

                                                            aGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTa                                >  2:5039977/1‑91 (MQ=255)

                                                            aGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTa                                >  1:6216081/1‑91 (MQ=255)

                                                             ggTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAttttct                               >  2:5962708/1‑89 (MQ=255)

                                                              gTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATc                              >  1:1006137/1‑91 (MQ=255)

                                                              gTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATc                              >  1:1199640/1‑91 (MQ=255)

                                                              gTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATc                              >  2:1669133/1‑91 (MQ=255)

                                                                gATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCtt                            >  2:6928549/1‑91 (MQ=255)

                                                                gATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCtt                            >  2:797926/1‑91 (MQ=255)

                                                                 aTTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCttt                           <  2:1074263/91‑1 (MQ=255)

                                                                  ttGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTa                          >  1:183633/1‑91 (MQ=255)

                                                                   tGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTaa                         <  1:15408/91‑1 (MQ=255)

                                                                   tGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTaa                         <  2:1574270/91‑1 (MQ=255)

                                                                    ggCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAAt                        <  1:2292660/91‑1 (MQ=255)

                                                                     gCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATa                       >  1:1654966/1‑91 (MQ=255)

                                                                      ccATACACTCAAGATATGGCTaatcaccttagttgaatttattttgtaatcaagggtattgattaagaagctttgtttttacgactaaaaa                      <  2:2916781‑M2/91‑71 (MQ=255)

                                                                       cATACACTCAAGATATGGCTAATCTCCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATAcc                     <  2:2080473/91‑1 (MQ=255)

                                                                       cATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCtata                                     >  2:3038149/1‑75 (MQ=255)

                                                                       cATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATAcc                     <  2:1258213/91‑1 (MQ=255)

                                                                       cATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATAcc                     <  1:651078/91‑1 (MQ=255)

                                                                        aTACACTCAAGATATGGCTaatcaccttagttgaatttattttgtaatcaagggtattgattaagaagctttgtttttacgactaaaaatc                    <  2:4200122‑M2/91‑73 (MQ=255)

                                                                        aTACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATAccc                    >  1:3144039/1‑91 (MQ=255)

                                                                         tACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCt                   >  1:1375298/1‑91 (MQ=255)

                                                                         tACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCt                   >  1:3769566/1‑91 (MQ=255)

                                                                          acacTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCtt                  <  2:148024/91‑1 (MQ=255)

                                                                             cTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTa               <  2:3288474/91‑1 (MQ=255)

                                                                             cTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTa               <  1:6645180/91‑1 (MQ=255)

                                                                              tCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATAAATATCTATAATTTATCTTTAATACCCTTTTaa              >  1:5555777/1‑91 (MQ=255)

                                                                               cAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAAt             >  1:4502492/1‑91 (MQ=255)

                                                                                 aGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATAc           >  2:3584132/1‑91 (MQ=255)

                                                                                 aGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATAc           >  2:3791184/1‑91 (MQ=255)

                                                                                   atatGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTa         >  1:2722436/1‑91 (MQ=255)

                                                                                     atGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTaaa       <  2:4408386/91‑1 (MQ=255)

                                                                                      tGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTGTAATACTaaaa      >  2:6990901/1‑91 (MQ=255)

                                                                                      tGGCTAATCACCTTTTTCAATGCAGAACAAACAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTaaaa      >  1:6818852/1‑91 (MQ=255)

                                                                                        gCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAAcc    <  2:1801333/91‑1 (MQ=255)

                                                                                        gCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAAcc    <  1:4964660/91‑1 (MQ=255)

                                                                                         cTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCa   >  2:6140590/1‑91 (MQ=255)

                                                                                         cTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCa   >  1:4208265/1‑91 (MQ=255)

                                                                                          tAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCaa  <  1:4592075/91‑1 (MQ=255)

TTTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAA  >  USA300TCH1516_ALE/1901251‑1901431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.